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SCNpilot_cont_300_bf_scaffold_722_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_722_curated_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..921)
DNA (921bp) protein (307aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY17_9RHIZ
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KFG68509.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_300_bf_scaffold_722_curated_2
bacterium YEK0313, Bacteria

Not on your lists

comp(958..1401)
DNA (444bp) protein (148aa)
h16_A1802; acetyltransferase (EC:2.3.1.-); K00680 [EC:2.3.1.-]
Acetyltransferase (GNAT) family n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KAR4_CUPNH
N-acetylglutamate synthase {ECO:0000313|EMBL:CEJ13715.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_722_curated_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1612..2604)
DNA (993bp) protein (331aa)
glpX; fructose 1,6-bisphosphatase II; K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11]
fructose 1,6-bisphosphatase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E19F20
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_300_bf_scaffold_722_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2623..3924)
DNA (1302bp) protein (434aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY13_9RHIZ
SCNpilot_cont_300_bf_scaffold_722_curated_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4009..4809)
DNA (801bp) protein (267aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
Probable L-aspartate dehydrogenase n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HBT7_9RHOB
SCNpilot_cont_300_bf_scaffold_722_curated_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4948..5454
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2P9B4_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL23747.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_cont_300_bf_scaffold_722_curated_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5530..6732)
DNA (1203bp) protein (401aa)
Putative acetyl-CoA acetyltransferase (PhbA/atoB/paaJ-like) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0TBV5_9BRAD
Beta-ketoadipyl-CoA thiolase {ECO:0000313|EMBL:CEJ11514.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative acetyl-CoA acetyltransferase PhbA/AtoB/PaaJ-like protein
SCNpilot_cont_300_bf_scaffold_722_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6827..8311)
DNA (1485bp) protein (495aa)
Putative mannitol dehydrogenase family protein {ECO:0000313|EMBL:KFC72166.1}; EC=1.1.1.57 {ECO:0000313|EMBL:KFC72166.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
D-mannonate oxidoreductase, NAD-binding n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZX1_AZOBR
uxuB; D-mannonate oxidoreductase, NAD-binding
SCNpilot_cont_300_bf_scaffold_722_curated_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8367..9173)
DNA (807bp) protein (269aa)
2-keto-4-pentenoate hydratase; K02554 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037E27EB
Uncharacterized protein {ECO:0000313|EMBL:KGM34541.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_722_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9271..9966
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030ED3B2
GntR family transcriptional regulator {ECO:0000313|EMBL:KGM34542.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_722_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9992..11398)
DNA (1407bp) protein (469aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glucuronate isomerase; K01812 glucuronate isomerase [EC:5.3.1.12]
glucuronate isomerase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A3F131
SCNpilot_cont_300_bf_scaffold_722_curated_12
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11481..12371
DNA (891bp) protein (297aa)
2-keto-3-deoxy-galactonokinase; K00883 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
2-keto-3-deoxy-galactonokinase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037A6CA0
2-keto-3-deoxy-galactonokinase {ECO:0000313|EMBL:ACA18960.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_300_bf_scaffold_722_curated_13
bacterium YEK0313, Bacteria

Not on your lists

comp(12376..13128)
DNA (753bp) protein (251aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=2 Tax=Acidiphilium RepID=A5FZA6_ACICJ
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:CEJ15001.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_722_curated_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13153..14670)
DNA (1518bp) protein (506aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 PF4_9BRAD">RepID=U1HPF4_9BRAD
glycerol-3-phosphate dehydrogenase
SCNpilot_cont_300_bf_scaffold_722_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14745..15944)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNR3_METS4
30S ribosomal protein S21 {ECO:0000313|EMBL:KFC67253.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_722_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16077..19196)
DNA (3120bp) protein (1040aa)
Putative RND efflux transporter n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HY52_AZOC5
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:KFC67255.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RND efflux transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_cont_300_bf_scaffold_722_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19245..20501)
DNA (1257bp) protein (419aa)
Secretion protein HlyD n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HY49_AZOC5
Secretion protein HlyD {ECO:0000313|EMBL:KFC67256.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hlyD; secretion protein HlyD
SCNpilot_cont_300_bf_scaffold_722_curated_18
bacterium YEK0313, Bacteria

Not on your lists

20858..22174
DNA (1317bp) protein (439aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSZ4_9RHIZ
sn-glycerol-3-phosphate-binding periplasmic protein UgpB {ECO:0000313|EMBL:CEJ15860.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
extracellular solute-binding protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_722_curated_19
bacterium YEK0313, Bacteria

Not on your lists

22337..23218
DNA (882bp) protein (294aa)
SN-glycerol-3-phosphate transport system permease protein UgpA n=2 Tax=Bradyrhizobiaceae RepID=F7QGP0_9BRAD
sn-glycerol-3-phosphate transport system permease protein UgpA {ECO:0000313|EMBL:CEJ15859.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
sugar ABC transporter permease; K05814 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_cont_300_bf_scaffold_722_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23218..24066
DNA (849bp) protein (283aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8B9_BRASB
SN-glycerol-3-phosphate transport system permease protein UgpE {ECO:0000313|EMBL:KFC72893.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sugar ABC transporter permease; K05815 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_cont_300_bf_scaffold_722_curated_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24113..25192
DNA (1080bp) protein (360aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter-like protein; K05816 sn-glycerol 3-phosphate transport system ATP-binding protein [EC:3.6.3.20]
ATPase component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSZ7_9RHIZ
SCNpilot_cont_300_bf_scaffold_722_curated_22
unknown

Not on your lists

25301..25408
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_722_curated_23
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25502..26503
DNA (1002bp) protein (334aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
DNA polymerase III, alpha subunit n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBX0_BEII9
SCNpilot_cont_300_bf_scaffold_722_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26500..28839
DNA (2340bp) protein (780aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dnaE1; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Afipia birgiae RepID=UPI0002E0D4E7
SCNpilot_cont_300_bf_scaffold_722_curated_25
unknown

Not on your lists

comp(28767..29006)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_722_curated_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30304..32691
DNA (2388bp) protein (796aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A1U5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHL99879.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_722_curated_27
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32912..33634)
DNA (723bp) protein (241aa)
Transcriptional regulatory protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1H8_9RHOB
Transcriptional regulatory protein {ECO:0000313|EMBL:EAQ02161.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_722_curated_28
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33732..34778
DNA (1047bp) protein (349aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C1826
Putative secreted protein {ECO:0000313|EMBL:CQR52863.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_722_curated_29
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34984..35814
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C886_SPHTD
ABC transporter permease {ECO:0000313|EMBL:CQR52866.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_300_bf_scaffold_722_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35801..36595
DNA (795bp) protein (265aa)
polyamine ABC transporter permease n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003AAD9A1
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:KFC75113.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component; K02053 putative spermidine/putrescine transport system permease protein
Displaying items 1-30 of 40 in total

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