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SCNpilot_cont_300_bf_scaffold_3437_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3437_curated_1
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..715)
DNA (714bp) protein (238aa)
Hydroxymethylbilane synthase {ECO:0000256|SAAS:SAAS00018413}; EC=2.5.1.61 {ECO:0000256|SAAS:SAAS00018413};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QVC4_9BRAD
SCNpilot_cont_300_bf_scaffold_3437_curated_2
unknown

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comp(807..1034)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3437_curated_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1149..1340)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UIA6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13309.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3437_curated_4
unknown

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comp(2227..3141)
DNA (915bp) protein (305aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3437_curated_5
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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3443..4795
DNA (1353bp) protein (451aa)
TPR repeat-containing protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QZ81_CHLT3
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACF13774.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
SCNpilot_cont_300_bf_scaffold_3437_curated_6
unknown

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5155..5688
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3437_curated_7
unknown

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comp(5699..6088)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3437_curated_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6449..7117
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Glaciecola chathamensis S18K6 RepID=K6WPZ7_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAO38771.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
VBCS repeat-containing protein
SCNpilot_cont_300_bf_scaffold_3437_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7227..9389)
DNA (2163bp) protein (721aa)
Putative uncharacterized protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RRY1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEZ17141.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_3437_curated_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9389..9652)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DE6DC
Uncharacterized protein {ECO:0000313|EMBL:KGD86576.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3437_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9816..10394
DNA (579bp) protein (193aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4S0_9RHIZ
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:AJP74795.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_3437_curated_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10397..11458
DNA (1062bp) protein (354aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingomonas wittichii RepID=UPI00035FA9AB
SCNpilot_cont_300_bf_scaffold_3437_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11455..12339
DNA (885bp) protein (295aa)
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI000373E934
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AJP74797.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_3437_curated_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12349..12573)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X188_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34000.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3437_curated_15
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12581..13531)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X187_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33999.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3437_curated_16
unknown

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comp(13583..13846)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3437_curated_17
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14031..14894)
DNA (864bp) protein (288aa)
Chain length determinant protein tyrosine kinase EpsG n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DBQ8_9BURK
Chain length determinant protein tyrosine kinase EpsG {ECO:0000313|EMBL:EZP39614.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
chain length determinant protein tyrosine kinase epsg
SCNpilot_cont_300_bf_scaffold_3437_curated_18
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15022..16434)
DNA (1413bp) protein (471aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8C5_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:CBA27733.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
lipopolysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_3437_curated_19
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16481..17266)
DNA (786bp) protein (262aa)
Polysaccharide export protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH72_BEII9
polysaccharide export protein; K01991 polysaccharide export outer membrane protein
Polysaccharide export protein {ECO:0000313|EMBL:ACB94485.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_3437_curated_20
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17312..18721)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH71_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB94484.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_3437_curated_21
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18852..19775)
DNA (924bp) protein (308aa)
Glycosyl transferase family 2 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ISR9_METNO
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACL60718.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_3437_curated_22
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19777..21171)
DNA (1395bp) protein (465aa)
Polysaccharide biosynthesis protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ISR8_METNO
polysaccharide biosynthesis protein; K03328 polysaccharide transporter, PST family
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ACL60717.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying 22 items

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