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SCNpilot_cont_300_bf_scaffold_1410_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1410_curated_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(470..1375)
DNA (906bp) protein (302aa)
Integrase, catalytic region n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQR6_NITWN
integrase, catalytic region
Integrase, catalytic region {ECO:0000313|EMBL:ABA05375.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1410_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1372..1701)
DNA (330bp) protein (110aa)
Transposase IS3/IS911 family protein n=2 Tax=Rhizobium RepID=H4F837_9RHIZ
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:EHS51054.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1410_curated_3
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2518..3381
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETZ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07363.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hemolysin-type calcium binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_1410_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3345..3713
DNA (369bp) protein (123aa)
transcriptional regulator n=1 Tax=Methylocystis parvus RepID=UPI000316EECA
TetR family transcriptional regulator
Transcriptional regulator TetR family {ECO:0000313|EMBL:ACM35470.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_1410_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3724..4008
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PHG4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40562.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1410_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4455..6035)
DNA (1581bp) protein (527aa)
FAD dependent oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQ36_RHITR
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:AGB72219.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_1410_curated_7
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6114..7052)
DNA (939bp) protein (313aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002E74144
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL81855.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
tauA; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1410_curated_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7088..7516)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JTZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD87353.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_cont_300_bf_scaffold_1410_curated_9
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7784..8542
DNA (759bp) protein (253aa)
GntR family transcriptional regulator n=2 Tax=Alcaligenes faecalis RepID=J0B7A5_ALCFA
GntR family transcriptional regulator {ECO:0000313|EMBL:EJC61935.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1410_curated_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8557..9039)
DNA (483bp) protein (161aa)
Multiple sugar transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJX6_9BRAD
Multiple sugar transport system permease {ECO:0000313|EMBL:ERF84761.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1410_curated_11
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9213..10013)
DNA (801bp) protein (267aa)
Nitrate/sulfonate/bicarbonate ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EJ59_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJL81857.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
tauC; nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_1410_curated_12
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10046..10864)
DNA (819bp) protein (273aa)
Nitrate/sulfonate/bicarbonate ABC transporter ATPase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EIA8_9BURK
Nitrate/sulfonate/bicarbonate ABC transporter ATPase {ECO:0000313|EMBL:EOA05641.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
tauB; nitrate/sulfonate/bicarbonate ABC transporter ATPase; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1410_curated_13
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11832..12188)
DNA (357bp) protein (119aa)
UPI0003CF1A18 related cluster n=1 Tax=unknown RepID=UPI0003CF1A18
Uncharacterized protein {ECO:0000313|EMBL:ESY64896.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
Displaying 13 items

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