ggKbase home page

SCNpilot_cont_300_bf_scaffold_1015_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1015_curated_1
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..798
DNA (798bp) protein (266aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI000288DD71
LysR family transcriptional regulator {ECO:0000313|EMBL:KHK55894.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1015_curated_2
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(823..1512)
DNA (690bp) protein (230aa)
dimethylmenaquinone methyltransferase (EC:2.-.-.-)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003784BCE
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
SCNpilot_cont_300_bf_scaffold_1015_curated_3
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1567..1992)
DNA (426bp) protein (142aa)
Extra-cytoplasmic solute receptor protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LGQ5_RALME
bug; ABC transporter substrate-binding protein
Extra-cytoplasmic solute receptor protein {ECO:0000313|EMBL:ABF10671.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_cont_300_bf_scaffold_1015_curated_4
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1938..2486)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W8U2_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ04899.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1015_curated_5
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..3444)
DNA (906bp) protein (302aa)
ABC transporter permease n=1 Tax=Pseudomonas fuscovaginae RepID=UPI00028949B1
ABC transporter permease {ECO:0000313|EMBL:KIZ51773.1}; TaxID=47885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas oryzihabitans.;"
tauC; sulfonate/nitrate/taurine transport system permease protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_1015_curated_6
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3437..4264)
DNA (828bp) protein (276aa)
sulfonate ABC transporter ATP-binding lipoprotein n=2 Tax=Pseudomonas fuscovaginae RepID=UPI000289F5A8
ABC transporter {ECO:0000313|EMBL:KEZ78675.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1015_curated_7
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4246..5226)
DNA (981bp) protein (327aa)
putative periplasmic substrate-binding transmembrane protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI00028935E2
Uncharacterized protein {ECO:0000313|EMBL:KIZ51771.1}; TaxID=47885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas oryzihabitans.;"
putative periplasmic substrate-binding transmembrane protein
SCNpilot_cont_300_bf_scaffold_1015_curated_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5502..6236)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000366F2B5
Uncharacterized protein {ECO:0000313|EMBL:KGM31139.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
phosphonate operon transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1015_curated_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6421..7560
DNA (1140bp) protein (380aa)
Phosphonate metabolism protein PhnM n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981Q4_RHILO
phosphonate metabolism protein PhnM; K06162 PhnM protein rbh
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:BAB54655.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_1015_curated_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7586..8068
DNA (483bp) protein (161aa)
Phosphonate metabolism protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TV03_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKB11614.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphonate metabolism protein PhnG; K06166 PhnG protein
SCNpilot_cont_300_bf_scaffold_1015_curated_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8065..8670
DNA (606bp) protein (202aa)
Phosphonate metabolism protein PhnH n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981Q2_RHILO
Phosphonate metabolism protein PhnH {ECO:0000313|EMBL:KKB11582.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphonate metabolism protein PhnH
SCNpilot_cont_300_bf_scaffold_1015_curated_12
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8672..9787
DNA (1116bp) protein (372aa)
Phosphonate metabolism protein PhnI n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981Q1_RHILO
phosphonate metabolism protein PhnI; K06164 PhnI protein rbh
Phosphonate metabolism protein PhnI {ECO:0000313|EMBL:BAB54658.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_1015_curated_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9784..10698
DNA (915bp) protein (305aa)
Phosphonate metabolism protein PhnJ n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981Q0_RHILO
Carbon-phosphorus lyase {ECO:0000313|EMBL:KKB11584.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphonate metabolism protein PhnJ rbh
SCNpilot_cont_300_bf_scaffold_1015_curated_14
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10695..11492
DNA (798bp) protein (266aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982B4_RHILO
phnK; phosphonate C-P lyase system protein PhnK; K05781 putative phosphonate transport system ATP-binding protein rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAB54545.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_1015_curated_15
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11507..12208
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28] rbh
phosphonate ABC transporter ATP-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3DCE2
Phosphonate ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB11585.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_300_bf_scaffold_1015_curated_16
bacterium YEK0313, Bacteria

Not on your lists

12205..12915
DNA (711bp) protein (237aa)
Polar amino acid transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HG58_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEJ14404.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phosphonate metabolism protein
SCNpilot_cont_300_bf_scaffold_1015_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12930..13550)
DNA (621bp) protein (207aa)
Putative acetyltransferase {ECO:0000313|EMBL:KFC65065.1}; EC=2.3.1.- {ECO:0000313|EMBL:KFC65065.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase; K00680 [EC:2.3.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036B88E0
SCNpilot_cont_300_bf_scaffold_1015_curated_18
bacterium YEK0313, Bacteria

Not on your lists

13703..14506
DNA (804bp) protein (268aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phosphonate ABC transporter ATPase; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28]
Phosphonate ABC transporter, ATPase subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEX8_XANP2
SCNpilot_cont_300_bf_scaffold_1015_curated_19
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14537..15445
DNA (909bp) protein (303aa)
Phosphonate ABC transporter, periplasmic phosphonate-binding protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEX7_XANP2
phosphonate ABC transporter periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein
Phosphonate ABC transporter, periplasmic phosphonate-binding protein {ECO:0000313|EMBL:ABS66570.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_300_bf_scaffold_1015_curated_20
bacterium YEK0313, Bacteria

Not on your lists

15453..16394
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030EADEB
Phosphate-import permease protein PhnE {ECO:0000313|EMBL:CEJ14684.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phosphonate ABC transporter inner membrane subunit; K02042 phosphonate transport system permease protein
SCNpilot_cont_300_bf_scaffold_1015_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16391..17257
DNA (867bp) protein (289aa)
phosphonate ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000348EDAF
Phosphonate ABC transporter, permease PhnE {ECO:0000313|EMBL:EKS39471.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein
SCNpilot_cont_300_bf_scaffold_1015_curated_22
bacterium YEK0313, Bacteria

Not on your lists

17331..18548
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030971F1
Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase {ECO:0000313|EMBL:CEJ14694.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
metal-dependent hydrolase
SCNpilot_cont_300_bf_scaffold_1015_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18545..19108
DNA (564bp) protein (188aa)
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; K05774 ribose 1,5-bisphosphokinase [EC:2.7.4.23]
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VN58_RHOPX
SCNpilot_cont_300_bf_scaffold_1015_curated_24
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19118..20968)
DNA (1851bp) protein (617aa)
ABC transporter related protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSK5_PSEUU
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_300_bf_scaffold_1015_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21221..21457)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L214_AGRSH
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:KFC75703.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07213 copper chaperone
SCNpilot_cont_300_bf_scaffold_1015_curated_26
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21601..23928
DNA (2328bp) protein (776aa)
Copper/silver-translocating P-type ATPase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKH3_9RHIZ
Copper/silver-translocating P-type ATPase {ECO:0000313|EMBL:EIM24465.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ATPase
Displaying 26 items

View Taxonomy