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SCNpilot_expt_1000_bf_scaffold_2814_curated

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2814_curated_1
unknown

Not on your lists

141..890
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2814_curated_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

924..2501
DNA (1578bp) protein (526aa)
O-succinylbenzoic acid--CoA ligase n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HYF9_9GAMM
AMP-dependent synthetase and ligase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_2814_curated_3
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2642..3340
DNA (699bp) protein (233aa)
Transcriptional regulator, GntR family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C2R6_HYPNA
GntR family transcriptional regulator {ECO:0000313|EMBL:KCZ98844.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2814_curated_4
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3542..4168
DNA (627bp) protein (209aa)
NADPH-dependent FMN reductase; K00299 FMN reductase [EC:1.5.1.38]
NADPH-dependent FMN reductase n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WF64_ACTMD
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ACU34196.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
SCNpilot_expt_1000_bf_scaffold_2814_curated_5

Not on your lists

comp(4183..4938)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 PF69_9ACTO">RepID=U2PF69_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKN41582.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_2814_curated_6
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

5167..5604
DNA (438bp) protein (146aa)
endoribonuclease L-PSP n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003072C3E
Translation initiation inhibitor
Tax=CSP1_4_Chloroflexi
SCNpilot_expt_1000_bf_scaffold_2814_curated_7
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5637..7175
DNA (1539bp) protein (513aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDH1_9BRAD
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EIG57827.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_8
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7229..8266
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344DD64
Uncharacterized protein {ECO:0000313|EMBL:EYT57197.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
luciferase family protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8277..9662
DNA (1386bp) protein (462aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2NB91_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETW95103.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCNpilot_expt_1000_bf_scaffold_2814_curated_10
unknown

Not on your lists

9690..10658
DNA (969bp) protein (323aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2814_curated_11
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10748..12370
DNA (1623bp) protein (541aa)
Acetolactate synthase large subunit n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG64_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF70723.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
putative acetolactate synthase
SCNpilot_expt_1000_bf_scaffold_2814_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12762..13145
DNA (384bp) protein (128aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000313|EMBL:CDX13987.1}; EC=2.7.7.4 {ECO:0000313|EMBL:CDX13987.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003725400
putative hydratase
SCNpilot_expt_1000_bf_scaffold_2814_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13182..14120)
DNA (939bp) protein (313aa)
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Rhizobium loti RepID=UPI00035DB582
Uncharacterized protein {ECO:0000313|EMBL:GAJ96568.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_14
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14126..15145)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037132A4
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AID28131.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_15
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15147..16010)
DNA (864bp) protein (288aa)
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000371450E
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AID28130.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
putative branched-chain amino acid ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_16
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16010..16720)
DNA (711bp) protein (237aa)
amino acid ABC transporter ATPase n=1 Tax=Rhizobium loti RepID=UPI000365A718
ABC transporter family protein {ECO:0000313|EMBL:AID28129.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
livF; high-affinity branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_17
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16713..17447)
DNA (735bp) protein (245aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI0003680E3E
ABC transporter family protein {ECO:0000313|EMBL:AID28128.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
putative branched-chain amino acid ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17518..18807)
DNA (1290bp) protein (430aa)
ABC transporter substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CID3_9RHIZ
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR83125.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_19
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18846..19511)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 PF1_9BRAD">RepID=H0SPF1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96078.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19527..20807)
DNA (1281bp) protein (427aa)
ABC transporter substrate-binding protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P130_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJF71778.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20782..22518)
DNA (1737bp) protein (579aa)
paaH; 3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI000372D0A6
NAD binding domain of 6-phosphogluconate dehydrogenase family protein {ECO:0000313|EMBL:AID28126.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_2814_curated_22
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22515..22862)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 PF5_9BRAD">RepID=H0SPF5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96082.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
cupin 2 barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22862..23701)
DNA (840bp) protein (280aa)
cyclase n=1 Tax=Rhizobium loti RepID=UPI00037B9D16
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EYR83129.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative cyclase
SCNpilot_expt_1000_bf_scaffold_2814_curated_24
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23884..24657
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037E29EB
IclR helix-turn-helix domain protein {ECO:0000313|EMBL:AID28122.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2814_curated_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24827..25894
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003652AED
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EUB99580.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25944..26819
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EBB30F
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:KFC63614.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_27
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26809..27642
DNA (834bp) protein (278aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000371C5DE
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99582.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative ABC-type sugar transport system, permease component
SCNpilot_expt_1000_bf_scaffold_2814_curated_28
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27668..28957
DNA (1290bp) protein (430aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2L0F5_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EUB99583.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative sugar ABC transporter, periplasmic substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29067..30506
DNA (1440bp) protein (480aa)
FAD binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003049FBC
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:KFC63617.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2814_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30656..32275
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003005692
FGGY-family pentulose kinase {ECO:0000313|EMBL:KFC63618.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FGGY-family pentulose kinase
Displaying items 1-30 of 43 in total

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