ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1433_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1433_curated_1

Not on your lists

comp(2..892)
DNA (891bp) protein (297aa)
Thiolase n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CB25_MYCTH
Uncharacterized protein {ECO:0000313|EMBL:KKL83892.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
thiolase
SCNpilot_expt_1000_bf_scaffold_1433_curated_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(950..2653)
DNA (1704bp) protein (568aa)
cyclohexanecarboxylate-CoA ligase (EC:6.2.1.26); K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
AMP-dependent synthetase and ligase id=4748863 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_3
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2689..3666)
DNA (978bp) protein (326aa)
fumarylacetoacetate hydrolase family protein (EC:3.-.-.-); K01567 [EC:3.-.-.-]
Possible isomerase/decarboxylase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXF3_9RHOB
Possible isomerase/decarboxylase {ECO:0000313|EMBL:EAQ03513.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_expt_1000_bf_scaffold_1433_curated_4
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3668..4441)
DNA (774bp) protein (258aa)
Cyclase, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXF2_9RHOB
Cyclase {ECO:0000313|EMBL:KGM50178.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
cyclase
SCNpilot_expt_1000_bf_scaffold_1433_curated_5
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4461..5759)
DNA (1299bp) protein (433aa)
TrapT family, dctM subunit, C4-dicarboxylate transport n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXF1_9RHOB
TrapT family, dctM subunit, C4-dicarboxylate transport {ECO:0000313|EMBL:EAQ03511.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
siaT; TRAP transporter, DctM-like membrane protein
SCNpilot_expt_1000_bf_scaffold_1433_curated_6
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5756..6313)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXF0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ03510.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1433_curated_7
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6341..7402)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXE9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ03509.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
TRAP-type C4-dicarboxylate transport system periplasmic component-like
SCNpilot_expt_1000_bf_scaffold_1433_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7535..7951)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C160_SPHTD
hypothetical protein; K07068
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_9
unknown

Not on your lists

8143..9195
DNA (1053bp) protein (351aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1433_curated_10
unknown

Not on your lists

11348..11650
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1433_curated_11
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12219..13013)
DNA (795bp) protein (265aa)
High-affinity branched chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z7Y3_DEHE1
high-affinity branched chain amino acid ABC transporter, ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_12
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13066..14121)
DNA (1056bp) protein (352aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family n=3 Tax=Dehalococcoides mccartyi RepID=A5FQW3_DEHSB
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=CG_Desulfob_01
SCNpilot_expt_1000_bf_scaffold_1433_curated_13
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(14123..15010)
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WK32_9BACI
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Tax=RBG_13_Chloroflexi_54_8_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_14
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(15013..17004)
DNA (1992bp) protein (664aa)
Putative fatty-acid--CoA ligase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2I3_CALAS
putative fatty-acid--CoA ligase
Tax=RBG_16_Chloroflexi_57_9_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_15
Anoxybacillus thermarum, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17001..17792)
DNA (792bp) protein (264aa)
Anoxybacillus thermarum strain AF/04 contig000015, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ94796.1}; EC=3.6.3.25 {ECO:0000313|EMBL:KIQ94796.1};; TaxID=404937 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus thermarum.;"
ABC transporter-like protein n=1 Tax=Anoxybacillus sp. DT3-1 RepID=M5QT88_9BACI
amino acid ABC transporter protein, ATPase
SCNpilot_expt_1000_bf_scaffold_1433_curated_16
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(17861..19417)
DNA (1557bp) protein (519aa)
methylmalonyl-CoA carboxytransferase (EC:2.1.3.1)
Propionyl-CoA carboxylase, putative id=4849609 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_13_Chloroflexi_54_9_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_17
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19563..20363)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GS86_PUSST
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:KCB44919.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_1433_curated_18
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20948..24274)
DNA (3327bp) protein (1109aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PML4_9BRAD
Carbamoyl-phosphate synthase large subunit {ECO:0000313|EMBL:KIF81143.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
carbamoyl-phosphate synthase L chain ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1433_curated_19
Variovorax sp. DB1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24624..25274)
DNA (651bp) protein (217aa)
Putative transcription regulator n=1 Tax=Variovorax sp. DB1 RepID=I3RYF3_9BURK
Putative transcription regulator {ECO:0000313|EMBL:AFK33040.1}; TaxID=1179817 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. DB1.;"
regulatory protein, TetR
SCNpilot_expt_1000_bf_scaffold_1433_curated_20
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25471..26259)
DNA (789bp) protein (263aa)
Oxidoreductase n=1 Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2TH14_9NOCA
Carbonyl reductase family member 4 {ECO:0000313|EMBL:AHK34146.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1433_curated_21
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27116..27655)
DNA (540bp) protein (180aa)
Transcriptional regulator n=1 Tax=Azoarcus sp. KH32C RepID=H0Q209_9RHOO
badR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAL25708.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_1433_curated_22
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27674..29272)
DNA (1599bp) protein (533aa)
long-chain-fatty-acid--CoA ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-]
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEA27414.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AEA27414.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
acyl-CoA synthetase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE385
SCNpilot_expt_1000_bf_scaffold_1433_curated_23
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29323..30012)
DNA (690bp) protein (230aa)
Putative urea ABC transporter, ATP-binding protein UrtE n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5U1_9PROT
Putative urea ABC transporter, ATP-binding protein UrtE {ECO:0000313|EMBL:EHL97400.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1433_curated_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(30009..30743)
DNA (735bp) protein (245aa)
ABC transporter related n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q6UP75_CUPPJ
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
SCNpilot_expt_1000_bf_scaffold_1433_curated_25
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30746..31567)
DNA (822bp) protein (274aa)
Inner-membrane translocator n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q6UP76_CUPPJ
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AAZ65787.1}; Putative ABC transporter permease protein {ECO:0000313|EMBL:AAR31061.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_1433_curated_26
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31831..32124
DNA (294bp) protein (98aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE22795.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_1433_curated_27
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32574..33797)
DNA (1224bp) protein (408aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q6UP78_CUPPJ
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:AAR31059.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_1433_curated_28
unknown

Not on your lists

comp(34120..34398)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1433_curated_29
unknown

Not on your lists

comp(34399..34551)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1433_curated_30
unknown

Not on your lists

comp(34585..34701)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying items 1-30 of 52 in total

View Taxonomy