ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2104_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2104_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1196
DNA (1194bp) protein (398aa)
Putative arylsulfatase regulatory protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KGI6_9RHOB
Sulfatase maturase {ECO:0000313|EMBL:KGE02182.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K06871 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_2
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1332..1805
DNA (474bp) protein (158aa)
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W8T0_DESOD
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2104_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1802..2665
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PTN4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDX53569.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_4
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2665..4911
DNA (2247bp) protein (749aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BXN1_ANAMD
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2104_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4913..5686)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F50B77
glxA; AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AFK57557.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_6
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6202..7131
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FFAE52
Transcriptional regulator {ECO:0000313|EMBL:KGJ07699.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2104_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7164..7721)
DNA (558bp) protein (186aa)
flavin reductase n=1 Tax=Hoeflea sp. 108 RepID=UPI000377E10F
Flavin reductase {ECO:0000313|EMBL:KIZ41475.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
flavin reductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_8
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7779..8297)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMD5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE07623.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_9
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8337..8822)
DNA (486bp) protein (162aa)
ABC transporter permease n=1 Tax=Aureimonas ureilytica RepID=UPI00037A143C
PotC protein {ECO:0000313|EMBL:BAQ47098.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_10
unknown

Not on your lists

8939..9211
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_11
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9178..10077)
DNA (900bp) protein (300aa)
ABC transporter membrane spanning protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8II05_AZOC5
ABC transporter permease
ABC transporter membrane spanning protein {ECO:0000313|EMBL:BAF89343.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_12
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10074..11138)
DNA (1065bp) protein (355aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL47_9RHIZ
ABC transporter {ECO:0000313|EMBL:GAN79766.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
ABC transporter; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11222..12406)
DNA (1185bp) protein (395aa)
ABC-type uncharacterized transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL46_9RHIZ
ABC-type uncharacterized transport system, periplasmic component {ECO:0000313|EMBL:EIM24688.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12508..13215)
DNA (708bp) protein (236aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CQY4_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL76446.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator GntR family
SCNpilot_expt_1000_bf_scaffold_2104_curated_15
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13285..13914
DNA (630bp) protein (210aa)
ilvD; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Rhizobium sp. CF142 RepID=J2L1W0_9RHIZ
Dihydroxyacid dehydratase/phosphogluconate dehydratase {ECO:0000313|EMBL:EJJ27009.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_16
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13965..14999
DNA (1035bp) protein (345aa)
ilvD2; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YHR4_MOBAS
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EAS49515.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_17
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15707..16531
DNA (825bp) protein (275aa)
Gluconolactonase n=1 Tax=Rhizobium sp. CF142 RepID=J1T5R6_9RHIZ
Gluconolactonase {ECO:0000313|EMBL:EJJ27011.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
gluconolactonase
SCNpilot_expt_1000_bf_scaffold_2104_curated_18
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16544..18328)
DNA (1785bp) protein (595aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q0B3_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX43996.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_19
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18369..19211)
DNA (843bp) protein (281aa)
Enoyl-CoA hydratase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RWQ2_9RALS
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:EPX96312.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_20
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19201..20406)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI000383153C
Uncharacterized protein {ECO:0000313|EMBL:AGP61402.1}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_1000_bf_scaffold_2104_curated_21
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20448..21242)
DNA (795bp) protein (265aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46MN0_CUPPJ
Citrate synthase {ECO:0000313|EMBL:AAZ65597.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_2104_curated_22
unknown

Not on your lists

comp(21272..22342)
DNA (1071bp) protein (357aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_23
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22339..23193)
DNA (855bp) protein (285aa)
Putative Binding-protein-dependent transport systems inner membrane component n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RNR7_BLASD
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAF44162.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
putative Binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2104_curated_24
Gordonia terrae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23193..24074)
DNA (882bp) protein (294aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gordonia terrae NBRC 100016 RepID=H5UFZ3_9ACTO
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAB44651.1}; TaxID=1089454 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia terrae NBRC 100016.;"
sulfonate/nitrate/taurine ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_2104_curated_25
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24263..25039
DNA (777bp) protein (259aa)
IclR family transcriptional regulator n=1 Tax=Thalassospira lucentensis RepID=UPI0003B55CE0
Transcriptional regulator {ECO:0000313|EMBL:KJC42130.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2104_curated_26
unknown

Not on your lists

comp(25339..25464)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_27
unknown

Not on your lists

comp(25528..25623)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_28
unknown

Not on your lists

comp(25816..26019)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_29
unknown

Not on your lists

comp(26290..26472)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2104_curated_30
unknown

Not on your lists

comp(26473..26625)
DNA (153bp) protein (51aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy