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SCNpilot_expt_1000_bf_scaffold_5001_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5001_curated_1
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..249
DNA (249bp) protein (83aa)
Putative cyclase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YZ46_BRASO
cyclase
Putative cyclase {ECO:0000313|EMBL:CAL79172.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(476..736)
DNA (261bp) protein (87aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDE2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5001_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

841..1818
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XCU3_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL53699.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1927..2202
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M5P1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17461.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_5
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3092..3469)
DNA (378bp) protein (126aa)
Mlr2817 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HL5_RHILO
hypothetical protein
Mlr2817 protein {ECO:0000313|EMBL:BAB49851.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3957..4652
DNA (696bp) protein (232aa)
Winged helix family two component transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP01_9RHIZ
Chemotaxis protein CheY {ECO:0000313|EMBL:EZQ14120.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
winged helix family two component transcriptional regulator; K13584 two-component system, cell cycle response regulator CtrA
SCNpilot_expt_1000_bf_scaffold_5001_curated_7
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4796..5164)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BB465
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGB44545.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5379..6008)
DNA (630bp) protein (210aa)
histidine phosphotransferase n=1 Tax=Rhizobium loti RepID=UPI00035C3D81
hypothetical protein; K13588 histidine phosphotransferase ChpT rbh
Uncharacterized protein {ECO:0000313|EMBL:AID32170.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6338..6922
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP04_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57532.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_10
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7312..8568
DNA (1257bp) protein (419aa)
UPI0003CF22A1 related cluster n=1 Tax=unknown RepID=UPI0003CF22A1
Uncharacterized protein {ECO:0000313|EMBL:ESY77365.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8579..9379)
DNA (801bp) protein (267aa)
tRNA/rRNA methyltransferase SpoU; K00599 [EC:2.1.1.-]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E8480
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ADV11225.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_12
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9426..9743)
DNA (318bp) protein (106aa)
UPI0003CFA5C0 related cluster n=1 Tax=unknown RepID=UPI0003CFA5C0
Transcriptional regulator {ECO:0000313|EMBL:ESZ21135.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5001_curated_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9960..10748)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYD7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09038.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative heme iron utilization protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10784..11098)
DNA (315bp) protein (105aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP09_9RHIZ
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EHK57537.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fatty acid-coA racemase
SCNpilot_expt_1000_bf_scaffold_5001_curated_15
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11969..12730)
DNA (762bp) protein (254aa)
UPI0003D02219 related cluster n=1 Tax=unknown RepID=UPI0003D02219
3-hydroxy-2-methylbutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ESZ29030.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_5001_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13353..13682
DNA (330bp) protein (110aa)
UPI0003CFE3FB related cluster n=1 Tax=unknown RepID=UPI0003CFE3FB
Diguanylate cyclase {ECO:0000313|EMBL:CDX42993.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_5001_curated_17
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13679..14143)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003650991
Wenxma_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ71169.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14174..14521)
DNA (348bp) protein (116aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SAR8_HAHCH
Dehydrogenase {ECO:0000313|EMBL:KKB11689.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14607..14765)
DNA (159bp) protein (53aa)
glycine/betaine/L-proline ABC transporter ATPase (EC:3.6.3.32); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
UPI0003CDDBD2 related cluster n=1 Tax=unknown RepID=UPI0003CDDBD2
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESW78422.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_20
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14996..15889
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAP8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR49746.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15831..16685)
DNA (855bp) protein (285aa)
opuAB; glycine/betaine/proline ABC transporter membrane protein (EC:3.6.3.32); K02001 glycine betaine/proline transport system permease protein
Glycine/betaine/proline transporter, membrane component of ABC transporter {ECO:0000313|EMBL:CCB65092.1}; EC=3.6.3.32 {ECO:0000313|EMBL:CCB65092.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Glycine/betaine/proline transporter, membrane component of ABC transporter n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBM1_HYPSM
SCNpilot_expt_1000_bf_scaffold_5001_curated_22
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16743..17681)
DNA (939bp) protein (313aa)
ABC transporter binding protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBM2_HYPSM
ABC transporter binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
ABC transporter binding protein {ECO:0000313|EMBL:CCB65093.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17910..18521
DNA (612bp) protein (204aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
thymidine kinase (EC:2.7.1.21); K00857 thymidine kinase [EC:2.7.1.21] rbh
Thymidine kinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MJT0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5001_curated_24
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18562..19158)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRR1_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU60257.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_expt_1000_bf_scaffold_5001_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19329..20414
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP43_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57497.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20650..21801
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP42_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57496.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21935..23848
DNA (1914bp) protein (638aa)
ATPase AAA n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A84C3
Uncharacterized protein {ECO:0000313|EMBL:CDX28544.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5001_curated_28
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23917..24159
DNA (243bp) protein (81aa)
Prevent-host-death family protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TC85_9DELT
Prevent-host-death family protein {ECO:0000313|EMBL:EPR34802.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5001_curated_29
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

24156..24572
DNA (417bp) protein (139aa)
PilT protein domain protein n=1 Tax=mine drainage metagenome RepID=T0YC12_9ZZZZ
hypothetical protein
Tax=RBG_16_Elusimicrobia_66_12_curated
SCNpilot_expt_1000_bf_scaffold_5001_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24577..25845
DNA (1269bp) protein (423aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP40_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57494.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
Displaying items 1-30 of 32 in total

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