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SCNpilot_expt_1000_bf_scaffold_3335_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3335_curated_1
unknown

Not on your lists

666..935
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_2
unknown

Not on your lists

1118..1543
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_3
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1950..3482
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
methylmalonyl-CoA carboxyltransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI000365C899
Propionyl-CoA carboxylase {ECO:0000313|EMBL:ABY38287.1}; TaxID=470137 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis (strain ATCC 23445 / NCTC 10510).;"
SCNpilot_expt_1000_bf_scaffold_3335_curated_4
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3490..4401
DNA (912bp) protein (304aa)
Uncharacterized GST-like protein yghU n=1 Tax=Rhizobium sp. RepID=L0NLL0_RHISP
S-transferase {ECO:0000313|EMBL:KEQ02370.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
glutathione S-transferase; K11209 GST-like protein
SCNpilot_expt_1000_bf_scaffold_3335_curated_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4401..6419
DNA (2019bp) protein (673aa)
Propionyl-CoA carboxylase alpha chain, mitochondrial {ECO:0000313|EMBL:CDX33003.1}; EC=6.4.1.3 {ECO:0000313|EMBL:CDX33003.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
carbamoyl-phosphate synthase L chain ATP-binding; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
acetyl-CoA carboxylase n=1 Tax=Hoeflea sp. 108 RepID=UPI000365F3BA
SCNpilot_expt_1000_bf_scaffold_3335_curated_6
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6801..7055)
DNA (255bp) protein (85aa)
id=3610420 bin=GWC2_Deltaproteobacteria_66_88 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
SCNpilot_expt_1000_bf_scaffold_3335_curated_7
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7155..7316)
DNA (162bp) protein (54aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_3335_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7433..8608
DNA (1176bp) protein (392aa)
methylmalonyl-CoA mutase N-terminal domain-containing protein; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
methylmalonyl-CoA mutase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D86441
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EXL04483.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_3335_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8765..9070)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C2663
Sulfur transfer protein {ECO:0000313|EMBL:EKE73638.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
sulfur carrier protein ThiS
SCNpilot_expt_1000_bf_scaffold_3335_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9080..10165)
DNA (1086bp) protein (362aa)
glycoside hydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036289DA
Glycoside hydrolase {ECO:0000313|EMBL:KGM32422.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
glycoside hydrolase family protein
SCNpilot_expt_1000_bf_scaffold_3335_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10825..11667
DNA (843bp) protein (281aa)
Short-chain alcohol dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J2L7J7_9RHIZ
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJJ29492.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3335_curated_12
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11889..13328
DNA (1440bp) protein (480aa)
TolC family type I secretion outer membrane protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8M5_9RHIZ
Channel protein TolC {ECO:0000313|EMBL:KGF69501.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE
SCNpilot_expt_1000_bf_scaffold_3335_curated_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13352..15508
DNA (2157bp) protein (719aa)
Type I secretion system ATPase, LssB family n=1 Tax=Rhizobium sp. CF122 RepID=J3BU56_9RHIZ
Type I secretion system ATPase, LssB family {ECO:0000313|EMBL:EJL57724.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
type I secretion system ATPase, LssB family
SCNpilot_expt_1000_bf_scaffold_3335_curated_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15505..16791
DNA (1287bp) protein (429aa)
HlyD family type I secretion membrane fusion protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MZB1_9RHIZ
HlyD family type I secretion membrane fusion protein {ECO:0000313|EMBL:EKF17343.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
type I secretion membrane fusion protein, HlyD family
SCNpilot_expt_1000_bf_scaffold_3335_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16849..17490
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U240_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86714.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3335_curated_16
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17507..18385)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YJK5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH04873.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3335_curated_17
Kluyveromyces marxianus, Kluyveromyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(19161..20216)
DNA (1056bp) protein (352aa)
Flo11 super family {ECO:0000313|EMBL:BAO41063.1}; TaxID=1003335 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces.;" source="Kluyveromyces marxianus DMKU3-1042.;"
SCNpilot_expt_1000_bf_scaffold_3335_curated_18
unknown

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comp(20256..20444)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_19
unknown

Not on your lists

comp(21327..22109)
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_20
unknown

Not on your lists

comp(22206..22679)
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_21
unknown

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comp(22836..23222)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_22
unknown

Not on your lists

comp(24000..24146)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_23
unknown

Not on your lists

comp(24207..24542)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_24
unknown

Not on your lists

comp(25146..25607)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_25
unknown

Not on your lists

comp(27945..28259)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_26
unknown

Not on your lists

comp(28332..28451)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3335_curated_27
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28657..28845
DNA (189bp) protein (63aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H468_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE93574.1}; Flags: Fragment;; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
Displaying 27 items

View Taxonomy