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SCNpilot_expt_1000_bf_scaffold_1614_curated

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1614_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..397)
DNA (396bp) protein (132aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Rhizobium giardinii RepID=UPI00037BB9BD
SCNpilot_expt_1000_bf_scaffold_1614_curated_2
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

773..1444
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y149_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY00759.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1742..1996
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VWI3_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC77736.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_4
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2045..2401
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FEA2_9RHIZ
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2668..3225
DNA (558bp) protein (186aa)
Hydrolase, NUDIX family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZM4_9PROT
Hydrolase, NUDIX family {ECO:0000313|EMBL:EHM01542.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_1614_curated_6

Not on your lists

3394..3567
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W9M9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU11229.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3658..4245
DNA (588bp) protein (196aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
5,10-methenyltetrahydrofolate synthetase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5,10-methenyltetrahydrofolate synthetase n=1 Tax=Rhizobium sp. CF142 RepID=J2ANE3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1614_curated_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4247..5071
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V8G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87317.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5288..5935
DNA (648bp) protein (216aa)
Zn-dependent hydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3EABE
Metallo-beta-lactamase family hydrolase protein {ECO:0000313|EMBL:AJD42683.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6654..7400
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein SHLA_56c00090 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD0_9RHIZ
Probable transcriptional regulatory protein OV14_0234 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7462..8463)
DNA (1002bp) protein (334aa)
Luciferase-like monooxygenase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SNM8_RHIET
luciferase-like monooxygenase protein
Luciferase-like monooxygenase protein {ECO:0000313|EMBL:AGS23274.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8590..10857)
DNA (2268bp) protein (756aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium phaseoli RepID=UPI00030AFF8E
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KEC74464.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11232..11522
DNA (291bp) protein (97aa)
ruvC; Holliday junction resolvase; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhizobium sp. AP16 RepID=J2WB01_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1614_curated_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11562..12179
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q0T7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1614_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12241..12525
DNA (285bp) protein (95aa)
Regulators of stationary/sporulation gene expression protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLH1_9RHIZ
Regulators of stationary/sporulation gene expression protein {ECO:0000313|EMBL:EHK58369.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_16
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12522..12917
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00038216B2
Twitching motility protein PilT {ECO:0000313|EMBL:ERM02093.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12914..13957
DNA (1044bp) protein (348aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhizobium sp. CF080 RepID=J3BSU4_9RHIZ
ruvB; Holliday junction DNA helicase ruvB
SCNpilot_expt_1000_bf_scaffold_1614_curated_18
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13954..14460
DNA (507bp) protein (169aa)
NUDIX hydrolase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UAT1_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:ENN87303.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
mutT; NTP pyrophosphohydrolase
SCNpilot_expt_1000_bf_scaffold_1614_curated_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14503..14961
DNA (459bp) protein (153aa)
4-hydroxybenzoyl-CoA thioesterase protein (EC:3.1.2.23)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CCBBC
Putative 4-hydroxybenzoyl-CoA thioesterase protein {ECO:0000313|EMBL:EGE60367.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_20
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15352..16071
DNA (720bp) protein (240aa)
Protein TolQ n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRX7_AGRVS
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ
Biopolymer transporter ExbB {ECO:0000313|EMBL:KEQ09701.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16094..16549
DNA (456bp) protein (152aa)
TolR protein n=1 Tax=Rhizobium sp. CF080 RepID=J3AXN5_9RHIZ
Protein TolR {ECO:0000313|EMBL:EUB97210.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
tolR; putative transport transmembrane protein; K03560 biopolymer transport protein TolR
SCNpilot_expt_1000_bf_scaffold_1614_curated_22
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..17723
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NHT1_RHISP
Signal peptide protein {ECO:0000313|EMBL:KGD99833.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tolA; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17741..18334
DNA (594bp) protein (198aa)
Protein TolB n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=TOLB_RHIEC
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tolB; translocation protein TolB; K03641 TolB protein
SCNpilot_expt_1000_bf_scaffold_1614_curated_24
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18301..19047
DNA (747bp) protein (249aa)
Protein TolB n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q0U5_9RHIZ
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
tolB; translocation protein TolB; K03641 TolB protein rbh
SCNpilot_expt_1000_bf_scaffold_1614_curated_25
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19254..19796
DNA (543bp) protein (181aa)
Outer membrane lipoprotein Omp16 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPU0_9RHIZ
Outer membrane lipoprotein omp16 {ECO:0000313|EMBL:CDN55245.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
outer membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_1614_curated_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20031..20987
DNA (957bp) protein (319aa)
YbgF domain-containing protein n=2 Tax=Rhizobium etli RepID=S5RZI3_RHIET
YbgF domain-containing protein
YbgF domain-containing protein {ECO:0000313|EMBL:AJC80965.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_1614_curated_27
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21005..22345
DNA (1341bp) protein (447aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
mesJ; cell cycle protein MesJ/cytosine deaminase-related protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Rhizobium sp. AP16 RepID=J2W737_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1614_curated_28
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22445..24385
DNA (1941bp) protein (647aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
ftsH; metalloprotease; K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Agrobacterium RepID=Q7CT50_AGRT5
SCNpilot_expt_1000_bf_scaffold_1614_curated_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24697..26049
DNA (1353bp) protein (451aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000255|HAMAP-Rule:MF_01554}; EC=5.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01554};; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Phosphoglucosamine mutase n=2 Tax=Rhizobium etli RepID=GLMM_RHIEC rbh
SCNpilot_expt_1000_bf_scaffold_1614_curated_30
unknown

Not on your lists

comp(26185..26478)
DNA (294bp) protein (98aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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