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SCNpilot_expt_1000_bf_scaffold_1344_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1344_curated_1
unknown

Not on your lists

comp(1..264)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1344_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

665..2350
DNA (1686bp) protein (562aa)
Putative hypoxanthine oxidase XdhD n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9RKQ8_9RHOB
Aldehyde oxidase/xanthine dehydrogenase family protein {ECO:0000313|EMBL:AJD46254.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
mop; aldehyde oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1344_curated_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2363..3856
DNA (1494bp) protein (498aa)
6-hydroxynicotinate reductase protein {ECO:0000313|EMBL:AJD46255.1}; EC=1.3.7.1 {ECO:0000313|EMBL:AJD46255.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DE84_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4504..4758
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2L153_9RHIZ
ApbE family protein {ECO:0000313|EMBL:AJD46256.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein; K09740 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4762..5343
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WEK7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ93730.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5340..5924
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2CVB3_9RHIZ
Amino acid synthesis family protein {ECO:0000313|EMBL:AJD46258.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_7
unknown

Not on your lists

6375..6476
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1344_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6473..7546
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZW7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53989.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein; K09799 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7798..8580)
DNA (783bp) protein (261aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium phaseoli RepID=UPI00036EC0C3
Xylose ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGE60478.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
multiple sugar ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8596..9909)
DNA (1314bp) protein (438aa)
ABC-type xylose transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3BCX7_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KGE01247.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
inner-membrane translocator; K10544 D-xylose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_11
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10115..11155)
DNA (1041bp) protein (347aa)
D-xylose-binding periplasmic protein n=1 Tax=Rhizobium sp. RepID=L0NHD7_RHISP
D-xylose-binding periplasmic protein {ECO:0000313|EMBL:CCF20226.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
xylF; D-xylose-binding periplasmic protein XylF
SCNpilot_expt_1000_bf_scaffold_1344_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11437..12618
DNA (1182bp) protein (394aa)
transcriptional regulator n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000377614D
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:EJJ30169.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12773..15700
DNA (2928bp) protein (976aa)
Putative aminotransferase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MHY4_RHISN
hypothetical protein
Putative aminotransferase {ECO:0000313|EMBL:ACP26486.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1344_curated_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15715..16398)
DNA (684bp) protein (228aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
D-Ala-D-Ala dipeptidase (EC:3.4.13.22); K08641 D-alanyl-D-alanine dipeptidase [EC:3.4.13.22]
peptidase M15 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000370AB05
SCNpilot_expt_1000_bf_scaffold_1344_curated_15
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16395..17078)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y8Q6_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR03848.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
von Willebrand factor A
SCNpilot_expt_1000_bf_scaffold_1344_curated_16
bacterium YEK0313, Bacteria

Not on your lists

comp(17172..17579)
DNA (408bp) protein (136aa)
Cu(I)-responsive transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I2X1_9RHIZ
HTH-type transcriptional regulator HmrR {ECO:0000313|EMBL:CEJ11412.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Cu(I)-responsive transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1344_curated_17
unknown

Not on your lists

17760..18167
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1344_curated_18
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18255..20774
DNA (2520bp) protein (840aa)
Protein-export membrane protein SECD n=1 Tax=Rhizobium sp. RepID=L0NKK7_RHISP
Preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:KGE00698.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
secD; bifunctional preprotein translocase subunit SecD/SecF; K12257 SecD/SecF fusion protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_19
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20924..21379
DNA (456bp) protein (152aa)
Protein required for attachment to host cell n=1 Tax=Rhizobium sp. CF142 RepID=J2L299_9RHIZ
Protein required for attachment to host cell {ECO:0000313|EMBL:EJJ27149.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21526..22983
DNA (1458bp) protein (486aa)
Phosphoglycerate dehydrogenase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A516_RHIET
Phosphoglycerate dehydrogenase protein {ECO:0000313|EMBL:EGE60441.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
phosphoglycerate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1344_curated_21
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22987..23949)
DNA (963bp) protein (321aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI0003684BA7
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEG06666.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_1344_curated_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24304..25920
DNA (1617bp) protein (539aa)
Extracellular solute-binding protein family 1 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUM9_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CCV07932.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_23
unknown

Not on your lists

comp(26037..26294)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1344_curated_24
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26444..26806
DNA (363bp) protein (121aa)
Sugar ABC transporter, permease protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U405_9RHOB
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:EAQ01141.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
ABC-type sugar transport system, permease component
SCNpilot_expt_1000_bf_scaffold_1344_curated_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26803..27765
DNA (963bp) protein (321aa)
UPI0003CFFCF5 related cluster n=1 Tax=unknown RepID=UPI0003CFFCF5
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX33092.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27769..28863
DNA (1095bp) protein (365aa)
Putative enzyme {ECO:0000313|EMBL:CCV07929.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCV07929.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
sugar ABC transporter ATP-binding protein n=1 Tax=Kaistia granuli RepID=UPI000366AE1E
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1344_curated_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28866..29924
DNA (1059bp) protein (353aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000313|EMBL:CDX59745.1}; EC=3.6.3.20 {ECO:0000313|EMBL:CDX59745.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CE9DA8 related cluster n=1 Tax=unknown RepID=UPI0003CE9DA8
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1344_curated_28
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29990..31060
DNA (1071bp) protein (357aa)
oxidoreductase n=1 Tax=Rhizobium meliloti RepID=UPI0003664622
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEG06667.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_1344_curated_29
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31200..31949
DNA (750bp) protein (250aa)
Xylose isomerase domain-containing protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J1H4_9RHIZ
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EMG52821.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1344_curated_30
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32079..33365
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6ULD2_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR64462.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying items 1-30 of 36 in total

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