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SCNpilot_expt_1000_bf_scaffold_6571_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6571_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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75..350
DNA (276bp) protein (92aa)
peroxiredoxin (EC:1.11.1.15)
UPI0003D02159 related cluster n=1 Tax=unknown RepID=UPI0003D02159
Peroxidase {ECO:0000313|EMBL:ESZ21891.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_2
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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389..721
DNA (333bp) protein (111aa)
peroxidase (EC:1.11.1.7)
Peroxidase {ECO:0000313|EMBL:ABR63744.1}; EC=1.11.1.7 {ECO:0000313|EMBL:ABR63744.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Peroxidase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UJB4_SINMW
SCNpilot_expt_1000_bf_scaffold_6571_curated_3
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(774..1544)
DNA (771bp) protein (257aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
UPI0003D031A3 related cluster n=1 Tax=unknown RepID=UPI0003D031A3
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:ESZ20861.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1541..2536)
DNA (996bp) protein (332aa)
ABC transporter membrane spanning protein (Ribose) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0Q6_AGRVS
rbsC; ribose ABC transporter permease; K02057 simple sugar transport system permease protein
ABC transporter membrane spanning protein (Ribose) {ECO:0000313|EMBL:ACM38454.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_5
unknown

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2579..2896
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6571_curated_6
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2740..3780)
DNA (1041bp) protein (347aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F7W2_9RHIZ
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:EHS51145.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
periplasmic binding protein/LacI transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6571_curated_7
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3817..4584)
DNA (768bp) protein (256aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
UPI0003CDDCA0 related cluster n=1 Tax=unknown RepID=UPI0003CDDCA0
ABC transporter related protein {ECO:0000313|EMBL:AEH89270.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4581..5330)
DNA (750bp) protein (250aa)
Transcriptional regulator ROK family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0Q3_AGRVS
xylR; transcriptional regulator ROK family
Transcriptional regulator ROK family {ECO:0000313|EMBL:ACM38451.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5793..6182)
DNA (390bp) protein (130aa)
Putative translation initiation inhibitor,endoribonuclease L-PSP family n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGL4_RHIFH
putative translation initiation inhibitor,endoribonuclease L-PSP family
Putative translation initiation inhibitor, endoribonuclease L-PSP family {ECO:0000313|EMBL:CCF00196.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_6571_curated_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6301..7404
DNA (1104bp) protein (368aa)
Putative amino acid aldolase or racemase n=1 Tax=Rhizobium sp. AP16 RepID=J2LE46_9RHIZ
Putative amino acid aldolase or racemase {ECO:0000313|EMBL:EJK85726.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
amino acid processing protein
SCNpilot_expt_1000_bf_scaffold_6571_curated_11
unknown

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7497..7994
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6571_curated_12
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8114..9310
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000381BE70
Uncharacterized protein {ECO:0000313|EMBL:ESQ82552.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
EmrB/QacA subfamily drug resistance transporter
Displaying 12 items

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