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SCNpilot_expt_1000_bf_scaffold_4379_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4379_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1510)
DNA (1509bp) protein (503aa)
GTP-binding protein TypA/BipA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF3_9RHIZ
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EYR79680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
typA; GTP-binding protein TypA/BipA
SCNpilot_expt_1000_bf_scaffold_4379_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1633..3210)
DNA (1578bp) protein (526aa)
Alkaline phosphatase D-related protein {ECO:0000313|EMBL:AJD43134.1}; EC=3.1.3.1 {ECO:0000313|EMBL:AJD43134.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
phosphodiesterase/alkaline phosphatase D,PhoD-like; K01113 alkaline phosphatase D [EC:3.1.3.1]
alkaline phosphatase n=1 Tax=Rhizobium mongolense RepID=UPI0003B5C00B
SCNpilot_expt_1000_bf_scaffold_4379_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3359..5461)
DNA (2103bp) protein (701aa)
Peptidyl-dipeptidase Dcp n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HRD7_9RHIZ
Peptidyl-dipeptidase Dcp {ECO:0000313|EMBL:EPE95836.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
peptidyl-dipeptidase dcp (Dipeptidyl carboxypeptidase)
SCNpilot_expt_1000_bf_scaffold_4379_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5673..6104
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035FF7A9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK09993.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6175..6510)
DNA (336bp) protein (112aa)
Putative threonine efflux protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SYV6_9RHIZ
Putative threonine efflux protein {ECO:0000313|EMBL:EJJ30448.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_4379_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7175..7423
DNA (249bp) protein (83aa)
Transcriptional regulator, MarR family n=2 Tax=Agrobacterium RepID=F0L3I4_AGRSH
MarR family transcriptional regulator {ECO:0000313|EMBL:CDN93110.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_4379_curated_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7582..8805)
DNA (1224bp) protein (408aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Argininosuccinate synthase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MAJ3_RHISN
SCNpilot_expt_1000_bf_scaffold_4379_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9127..9990
DNA (864bp) protein (288aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAK2_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHS50165.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4379_curated_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10171..10965)
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HB79_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EPE95844.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ABC transporter; K05833 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4379_curated_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10962..11840)
DNA (879bp) protein (293aa)
ABC-type transporter, integral membrane subunit n=6 Tax=Rhizobium meliloti RepID=F6BU19_SINMB
Putative transport system permease ABC transporter
Putative transport system permease ABC transporter {ECO:0000313|EMBL:CAC47791.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11963..12916)
DNA (954bp) protein (318aa)
ABC-type uncharacterized transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2LBJ9_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KDP71499.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter substrate-binding protein; K01989 putative ABC transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4379_curated_12
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13008..14249)
DNA (1242bp) protein (414aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=3
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rhizobium sp. RepID=L0NK34_RHISP
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4379_curated_13
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14481..14984)
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Rhizobium radiobacter RepID=G6XTK9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:GAK71442.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_4379_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15287..15667)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000369DE56
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF86016.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_15
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16047..16358)
DNA (312bp) protein (104aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
2'-5' RNA ligase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JCJ4_AGRRK
SCNpilot_expt_1000_bf_scaffold_4379_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16699..17352)
DNA (654bp) protein (218aa)
lipase/arylesterase; K01076 [EC:3.1.2.-]
Lysophospholipase L1-like esterase n=1 Tax=Rhizobium sp. CF142 RepID=J2LAB9_9RHIZ
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:EJJ30462.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_17
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17440..18150
DNA (711bp) protein (237aa)
ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK79_9RHIZ
ABC transporter {ECO:0000313|EMBL:EKF61328.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ABC transporter permease; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4379_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18147..20696
DNA (2550bp) protein (850aa)
glycosyl transferase family 1 n=1 Tax=Rhizobium gallicum RepID=UPI0003745187
ABC transporter permease {ECO:0000313|EMBL:KEC71709.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
ABC transporter, permease (involved in lysophospholipase L1 biosynthesis); K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4379_curated_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20889..21626
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MAI2_RHISN
hypothetical protein; K06890
Uncharacterized protein {ECO:0000313|EMBL:ACP26975.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_20
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21763..22164)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2D4A4_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJK84504.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_4379_curated_21
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22431..22943)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VQ51_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ21027.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
Displaying 21 items

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