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SCNpilot_expt_1000_bf_scaffold_1546_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1546_curated_1
unknown

Not on your lists

2..133
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1546_curated_2
DS1215_Halomonas_54_146, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

367..1722
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037676AA
hypothetical protein
Tax=DS1215_Halomonas_54_146
SCNpilot_expt_1000_bf_scaffold_1546_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1840..2871)
DNA (1032bp) protein (344aa)
Glyoxylate reductase GyaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDQ7_9RHIZ
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding {ECO:0000313|EMBL:AHK43047.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding
SCNpilot_expt_1000_bf_scaffold_1546_curated_4
unknown

Not on your lists

comp(2963..3316)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1546_curated_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3417..4268)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYU6_AGRVS
NLP/P60 protein {ECO:0000313|EMBL:EUC00617.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..4657)
DNA (351bp) protein (117aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium phaseoli RepID=UPI0002FCD6DC
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AIC25407.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
MarR family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_7
unknown

Not on your lists

comp(5083..5880)
DNA (798bp) protein (266aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1546_curated_8
unknown

Not on your lists

6058..6156
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1546_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6295..7125
DNA (831bp) protein (277aa)
Tetratricopeptide TPR_4 n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZXJ8_RHILW
hypothetical protein
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ACI57457.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1546_curated_10
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7172..7804)
DNA (633bp) protein (211aa)
Acetylpolyamine aminohydrolase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PUY5_9RHIZ
Acetylpolyamine aminohydrolase {ECO:0000313|EMBL:EJT03123.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
acetylpolyamine aminohydrolase protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_11
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8315..8710)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0C6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53869.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8824..9342)
DNA (519bp) protein (173aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2B4M6_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EJJ30975.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1546_curated_13
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9364..10005)
DNA (642bp) protein (214aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3B9U5_9RHIZ
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EUC00600.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10103..11365
DNA (1263bp) protein (421aa)
Major facilitator superfamily MFS-1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0G1_9RHIZ
Major facilitator superfamily MFS-1 {ECO:0000313|EMBL:EYR83674.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11441..13267
DNA (1827bp) protein (609aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Elongation factor 4 n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HA92_RHIRD
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA rbh
SCNpilot_expt_1000_bf_scaffold_1546_curated_16
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13347..13571
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=J6DMQ1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJZ22022.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_1546_curated_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13572..13871
DNA (300bp) protein (100aa)
CcdB protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QY84_9RHIZ
Pirin {ECO:0000313|EMBL:KGD86608.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
CcdB protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_18
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13959..14642
DNA (684bp) protein (228aa)
Transcriptional regulator, GntR family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCG8_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCV09654.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_1546_curated_19
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14720..15970
DNA (1251bp) protein (417aa)
Aminotransferase nifS2 n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H4P5_9RHIZ
Aminotransferase nifS2 {ECO:0000313|EMBL:EPE94037.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
cysteine desulfurase family protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16177..16749
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BH58_RHILV
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 23 {ECO:0000313|EMBL:CDN56829.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_1546_curated_21
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16971..18107
DNA (1137bp) protein (379aa)
Methyl-accepting chemotaxis protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVG4_9PROT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CAM74621.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18104..19192
DNA (1089bp) protein (363aa)
Glycine receptor, alpha 4 subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVG5_9PROT
Glycine receptor, alpha 4 subunit {ECO:0000313|EMBL:CAM74622.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_23
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19233..20894)
DNA (1662bp) protein (554aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hutU; urocanate hydratase; K01712 urocanate hydratase [EC:4.2.1.49]
urocanate hydratase n=1 Tax=Rhizobium leguminosarum RepID=UPI000378AF41
SCNpilot_expt_1000_bf_scaffold_1546_curated_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21155..22249)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGL8_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69851.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1546_curated_25
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22279..23490)
DNA (1212bp) protein (404aa)
Allantoate amidohydrolase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IMT7_9RHIZ
Allantoate amidohydrolase {ECO:0000313|EMBL:EPE99998.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
N-carbamoyl-L-amino acid hydrolase
SCNpilot_expt_1000_bf_scaffold_1546_curated_26
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23495..24871)
DNA (1377bp) protein (459aa)
allantoinase; K01466 allantoinase [EC:3.5.2.5]
Allantoinase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7S4_AGRRK
Dihydroorotase-like cyclic amidohydrolase {ECO:0000313|EMBL:EJK78565.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1546_curated_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24902..26485)
DNA (1584bp) protein (528aa)
Phenylalanine and histidine ammonia-lyase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LID0_RHITR
phenylalanine and histidine ammonia-lyase
Phenylalanine and histidine ammonia-lyase {ECO:0000313|EMBL:AGB69854.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1546_curated_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26595..27794
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364C75D
Uncharacterized protein {ECO:0000313|EMBL:KFL25021.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_1546_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27804..28316)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036501FB
Uncharacterized protein {ECO:0000313|EMBL:ENN84209.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1546_curated_30
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28562..30133)
DNA (1572bp) protein (524aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Ubiquinone biosynthesis protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I4C5_9RHIZ
ubiB; ubiquinone biosynthesis protein; K03688 ubiquinone biosynthesis protein
Displaying items 1-30 of 64 in total

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