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SCNpilot_expt_1000_bf_scaffold_3175_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3175_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..187
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCJ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3175_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

374..1414
DNA (1041bp) protein (347aa)
Oxidoreductase, zinc-binding dehydrogenase family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LK06_RHITR
oxidoreductase, zinc-binding dehydrogenase family
Oxidoreductase, zinc-binding dehydrogenase family {ECO:0000313|EMBL:AGB71562.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1472..2338)
DNA (867bp) protein (289aa)
UPI0003CFBE3D related cluster n=1 Tax=unknown RepID=UPI0003CFBE3D
LysR family transcriptional regulator {ECO:0000313|EMBL:CDX42485.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3175_curated_4
unknown

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2449..2682
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3175_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2785..4020)
DNA (1236bp) protein (412aa)
Putative FAD-dependent monooxygenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9H8_9RHIZ
Putative FAD-dependent monooxygenase {ECO:0000313|EMBL:ENN87672.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
FAD-dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3175_curated_6
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4036..4455)
DNA (420bp) protein (140aa)
transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037B3AF8
transcriptional regulator, HxlR family
Putative HTH-type transcriptional regulator ydeP {ECO:0000313|EMBL:CDM58310.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4597..5484
DNA (888bp) protein (296aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0HB91_RHILT
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EJB07690.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
NmrA family protein
SCNpilot_expt_1000_bf_scaffold_3175_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5488..6240)
DNA (753bp) protein (251aa)
pdxJ; pyridoxine 5'-phosphate synthase (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTB6_RHIE6
SCNpilot_expt_1000_bf_scaffold_3175_curated_9
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6498..7673
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI000375ABB2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR60818.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8056..8751
DNA (696bp) protein (232aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1SUS1_9RHIZ
MerR family transcriptional regulator {ECO:0000313|EMBL:KEC73733.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_3175_curated_11
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8764..9951)
DNA (1188bp) protein (396aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000379E7E0
Exodeoxyribonuclease V protein subunit alpha {ECO:0000313|EMBL:KEC77666.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9997..10377)
DNA (381bp) protein (127aa)
Nitrile hydratase accessory protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TB71_9RHIZ
Nitrile hydratase accessory protein {ECO:0000313|EMBL:EJJ29011.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3175_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10364..11023)
DNA (660bp) protein (220aa)
nthB; nitrile hydratase subunit beta (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84]
Nitrile hydratase protein, beta subunit n=2 Tax=Rhizobium etli RepID=B3PTC8_RHIE6
Nitrile hydratase protein, beta subunit {ECO:0000313|EMBL:EGE58488.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11020..11670)
DNA (651bp) protein (217aa)
nitrile hydratase subunit alpha (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84]
High-molecular weight cobalt-containing nitrile hydratase subunit alpha n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036D149A
Nitrile hydratase, alpha subunit {ECO:0000313|EMBL:EJB07674.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11698..12291)
DNA (594bp) protein (198aa)
lysine transporter LysE n=1 Tax=Rhizobium radiobacter RepID=UPI00035C5BB0
Lysine transporter LysE {ECO:0000313|EMBL:KDR86997.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
Lysine exporter protein
SCNpilot_expt_1000_bf_scaffold_3175_curated_16
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12484..13329
DNA (846bp) protein (282aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Rhizobium sp. AP16 RepID=J2L490_9RHIZ
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJK82186.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3175_curated_17
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13394..13966)
DNA (573bp) protein (191aa)
Acetolactate synthase 3 small subunit {ECO:0000313|EMBL:AJD41762.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AJD41762.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000373F073
SCNpilot_expt_1000_bf_scaffold_3175_curated_18
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14002..14403)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034D36C8
PilT protein domain-containing protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_3175_curated_19
unknown

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comp(14384..14671)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3175_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14727..15290)
DNA (564bp) protein (188aa)
ilvI; acetolactate synthase 3 catalytic subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Acetolactate synthase n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTP3_RHIE6
SCNpilot_expt_1000_bf_scaffold_3175_curated_21
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15242..16453)
DNA (1212bp) protein (404aa)
ilvI; acetolactate synthase 3 catalytic subunit (EC:1.2.2.2); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F2N5_9RHIZ
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EHS53076.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_3175_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16814..18910
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JGK1_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:ACM26975.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
hypothetical protein; K06915
SCNpilot_expt_1000_bf_scaffold_3175_curated_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18918..19373)
DNA (456bp) protein (152aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium t
tRNA dimethylallyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LK46_RHITR
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
Displaying 23 items

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