ggKbase home page

SCNpilot_expt_1000_bf_scaffold_9680_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9680_curated_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..959
DNA (957bp) protein (319aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Aspartate-semialdehyde dehydrogenase n=2 Tax=Rhizobium tropici RepID=L0LSF2_RHITR
asd; aspartate-semialdehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_9680_curated_2
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1169..1684
DNA (516bp) protein (172aa)
putative lytic murein transglycosylase (EC:3.2.1.-)
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:KIV67575.1}; EC=3.2.1.- {ECO:0000313|EMBL:KIV67575.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Putative lytic murein transglycosylase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PWP9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_9680_curated_3
unknown

Not on your lists

comp(1519..2145)
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9680_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2096..3628)
DNA (1533bp) protein (511aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KY38_9RHIZ
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJJ25684.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_9680_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3842..4138)
DNA (297bp) protein (99aa)
cynT; putative carbonic anhydrase protein; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956, ECO:0000313|EMBL:CAC47897.1};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
Carbonic anhydrase n=8 Tax=Rhizobium meliloti RepID=F6BNX4_SINMB
SCNpilot_expt_1000_bf_scaffold_9680_curated_6
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5448)
DNA (876bp) protein (292aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
pdxY; pyridoxamine kinase (EC:2.7.1.35)
Pyridoxamine kinase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HBS2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_9680_curated_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5703..10334
DNA (4632bp) protein (1544aa)
NAD-glutamate dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSJ1_RHITR
NAD-glutamate dehydrogenase
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:AGB73090.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_9680_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10545..11939
DNA (1395bp) protein (465aa)
Putative major facilitator superfamily (MFS) drug efflux transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSG2_RHITR
putative major facilitator superfamily (MFS) drug efflux transporter
Putative major facilitator superfamily (MFS) drug efflux transporter {ECO:0000313|EMBL:AGB73089.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_9680_curated_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12005..13621)
DNA (1617bp) protein (539aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Rhizobium sp. CF080 RepID=J3BUA6_9RHIZ
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_9680_curated_10
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13700..13936)
DNA (237bp) protein (79aa)
heparinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000373B07C
Heparinase {ECO:0000313|EMBL:KEQ05145.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
Heparinase II/III
SCNpilot_expt_1000_bf_scaffold_9680_curated_11
unknown

Not on your lists

14336..15415
DNA (1080bp) protein (360aa)

This feature has no annotations

Displaying 11 items

View Taxonomy