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SCNpilot_expt_1000_bf_scaffold_1392_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1392_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..773)
DNA (771bp) protein (257aa)
etf; electrotransfer ubiquinone oxidoreductase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Flavin-dependent dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VJX1_RHILT
Flavin-dependent dehydrogenase {ECO:0000313|EMBL:EJC73621.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_2
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1024..2421
DNA (1398bp) protein (466aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY8_9RHIZ
FAD-linked oxidase {ECO:0000313|EMBL:KEQ03646.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
FAD linked oxidase-like protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2448..3236
DNA (789bp) protein (263aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-(Acyl-carrier-protein) reductase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC16_AGRRK
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KEA07561.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_4
unknown

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comp(3294..3698)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1392_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3829..4647)
DNA (819bp) protein (273aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Beta-lactamase OXA-18 n=2 Tax=Pseudomonas aeruginosa RepID=BLO18_PSEAI rbh
beta-lactamase class D
SCNpilot_expt_1000_bf_scaffold_1392_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4751..5650
DNA (900bp) protein (300aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1T1Q0_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KGD85777.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
HTH-type transcriptional activator
SCNpilot_expt_1000_bf_scaffold_1392_curated_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5781..6089
DNA (309bp) protein (103aa)
Molecular chaperone n=1 Tax=Rhizobium sp. CF080 RepID=J2JKE4_9RHIZ
HSP70 family molecular chaperone {ECO:0000313|EMBL:CDN53251.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
dnaK2; molecular chaperone heat shock protein (hsp70); K04046 hypothetical chaperone protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6089..7063
DNA (975bp) protein (325aa)
Molecular chaperone n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N6L4_RHILT
Molecular chaperone {ECO:0000313|EMBL:EJB03549.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
molecular chaperone heat shock protein (HSP70); K04046 hypothetical chaperone protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7125..8021
DNA (897bp) protein (299aa)
Uracil-DNA glycosylase, family 4 n=1 Tax=Rhizobium sp. CF142 RepID=J1SK05_9RHIZ
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EJJ25523.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
putative DNA polymerase bacteriophage type
SCNpilot_expt_1000_bf_scaffold_1392_curated_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8161..8343
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BZU4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95220.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_11
unknown

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8376..8555
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1392_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8560..9495)
DNA (936bp) protein (312aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum RepID=C6ASX8_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS55377.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_13
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9699..10937
DNA (1239bp) protein (413aa)
Transporter permease protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JBM3_AGRRK
transporter permease
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJK84947.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_14
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11027..12097
DNA (1071bp) protein (357aa)
CAAX amino terminal protease family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2J4_9PROT
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EXJ14823.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12116..13045)
DNA (930bp) protein (310aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W0B4_RHILT
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJC78543.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
permease
SCNpilot_expt_1000_bf_scaffold_1392_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13376..16024
DNA (2649bp) protein (883aa)
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Rhizobium sp. CF142 RepID=J1SK09_9RHIZ
Aminopeptidase N {ECO:0000313|EMBL:EJJ25528.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_17
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16180..18498
DNA (2319bp) protein (773aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
multi-sensor signal transduction histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TEM2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1392_curated_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18505..21465)
DNA (2961bp) protein (987aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH05_RHITR
glutamate-ammonia ligase adenylyltransferase family protein
SCNpilot_expt_1000_bf_scaffold_1392_curated_19
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21602..22861)
DNA (1260bp) protein (420aa)
ragB; two component sensor histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
Two component sensor histidine kinase n=2 Tax=Agrobacterium RepID=F0L8L9_AGRSH
SCNpilot_expt_1000_bf_scaffold_1392_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22881..23636)
DNA (756bp) protein (252aa)
Two-component response regulator protein n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JBL7_AGRRK
ragA; two-component response regulator protein; K02483 two-component system, OmpR family, response regulator
PhoB family transcriptional regulator {ECO:0000313|EMBL:KEA07572.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23728..25278)
DNA (1551bp) protein (517aa)
degP1; periplasmic serine endoprotease DegP-like protein (EC:3.4.21.107)
serine peptidase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003786933
Serine protease do-like {ECO:0000313|EMBL:AHK43786.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25414..25887)
DNA (474bp) protein (158aa)
Cytochrome c biogenesis protein n=2 Tax=Rhizobium etli RepID=B3PU63_RHIE6
cycL; cytochrome c biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
Cytochrome c biogenesis protein {ECO:0000313|EMBL:ACE90367.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_23
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25884..27290)
DNA (1407bp) protein (469aa)
heme lyase subunit CcmF n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037E4E1E
Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:KEQ03189.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
cytochrome C biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
SCNpilot_expt_1000_bf_scaffold_1392_curated_24
unknown

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27442..27588
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1392_curated_25
unknown

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27589..27840
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1392_curated_26
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27857..28306)
DNA (450bp) protein (150aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0Q6_9RHIZ
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
cycJ; cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE
SCNpilot_expt_1000_bf_scaffold_1392_curated_27
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28303..29451)
DNA (1149bp) protein (383aa)
cytochrome C biogenesis protein CycH n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003671756
ccmI-1; cytochrome-c-type biogenesis protein CcmI 1
Cytochrome-c-type biogenesis protein CcmI 1 {ECO:0000313|EMBL:AGS21127.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1392_curated_28
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29568..30035)
DNA (468bp) protein (156aa)
lipA protein n=1 Tax=Sinorhizobium medicae RepID=UPI0003806A14
Membrane protein {ECO:0000313|EMBL:KEQ03192.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
putative outer-membranne lipoprotein
SCNpilot_expt_1000_bf_scaffold_1392_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30114..30548)
DNA (435bp) protein (145aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Two-component sensor histidine kinase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U7F5_9RHIZ
feuQ; two-component sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_1392_curated_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30536..31483)
DNA (948bp) protein (316aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGH3_RHITR
hypothetical protein
Displaying items 1-30 of 64 in total

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