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SCNpilot_expt_1000_bf_scaffold_4456_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4456_curated_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

439..960
DNA (522bp) protein (174aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
psd; phosphatidylserine decarboxylase proenzyme (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QTB2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4456_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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980..1849
DNA (870bp) protein (290aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:AJD40666.1}; EC=2.7.8.8 {ECO:0000313|EMBL:AJD40666.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B715AB
SCNpilot_expt_1000_bf_scaffold_4456_curated_3
unknown

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2042..2191
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4456_curated_4
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2375..3139)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037DFC1B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEA07420.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3184..3504)
DNA (321bp) protein (107aa)
UPF0060 membrane protein RTCIAT899_CH05915 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKL3_RHITR
membrane protein
UPF0060 membrane protein RTCIAT899_CH05915 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3757..4176
DNA (420bp) protein (140aa)
NUDIX hydrolase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATI8_RHILS
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACS55464.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4232..4663
DNA (432bp) protein (144aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC88_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ91561.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_8
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4763..5023
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A7DB8
Uncharacterized protein {ECO:0000313|EMBL:KEC81099.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4456_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5041..5787
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2X2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27852.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4456_curated_10
unknown

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comp(5833..6429)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4456_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6665..7285
DNA (621bp) protein (207aa)
Putative HD superfamily hydrolase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0K0C5_RHILV
Putative HD superfamily hydrolase {ECO:0000313|EMBL:EJC70329.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hydrolase protein; K06952
SCNpilot_expt_1000_bf_scaffold_4456_curated_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7282..7821
DNA (540bp) protein (180aa)
tyrosine phosphatase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000376BCEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP24645.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7926..8744
DNA (819bp) protein (273aa)
Putative mechanosensitive ion channel protein n=2 Tax=Rhizobium RepID=B3PUP9_RHIE6
mechanosensitive ion channel protein; K03442 small conductance mechanosensitive channel
Putative mechanosensitive ion channel protein {ECO:0000313|EMBL:ACE90448.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_4456_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8770..9276)
DNA (507bp) protein (169aa)
copper/zinc binding superoxide dismutase; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
Superoxide dismutase [Cu-Zn] n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATI0_RHILS
SCNpilot_expt_1000_bf_scaffold_4456_curated_15
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9660..11522
DNA (1863bp) protein (621aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AWI9_9RHIZ
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJJ27845.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
signal-transducer protein
SCNpilot_expt_1000_bf_scaffold_4456_curated_16
unknown

Not on your lists

comp(11760..13157)
DNA (1398bp) protein (466aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4456_curated_17
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13403..13687
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036FE112
Membrane protein {ECO:0000313|EMBL:KEQ06925.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
Displaying 17 items

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