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SCNpilot_expt_1000_bf_scaffold_7329_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7329_curated_1
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..301)
DNA (300bp) protein (100aa)
malate/L-lactate dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272]
Malate/L-lactate dehydrogenase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UK57_SINMW
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:ABR64037.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_2
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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401..1084
DNA (684bp) protein (228aa)
GntR family transcriptional regulator n=1 Tax=Sinorhizobium medicae RepID=UPI0003771A61
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABR64038.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1697..2638
DNA (942bp) protein (314aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter ATP-binding protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G8N0_RHIML
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EHK74347.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_4
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2601..3599
DNA (999bp) protein (333aa)
ABC transporter permease n=1 Tax=Rhizobium meliloti RepID=UPI00036E3379
ABC transporter permease {ECO:0000313|EMBL:KJF72723.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7329_curated_5
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3647..4612
DNA (966bp) protein (322aa)
Putative ABC transporter, periplasmic solute-binding protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UK61_SINMW
putative ABC transporter, periplasmic solute-binding protein; K10439 ribose transport system substrate-binding protein
Putative ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:ABR64041.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_6
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4674..5261
DNA (588bp) protein (196aa)
PfpI family intracellular peptidase; K05520 protease I [EC:3.2.-.-]
Intracellular protease, PfpI family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UK62_SINMW
Intracellular protease, PfpI family {ECO:0000313|EMBL:ABR64042.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_7
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7457..8467)
DNA (1011bp) protein (337aa)
Transcriptional regulator, AraC family protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FMB5_PELBH
Uncharacterized protein {ECO:0000313|EMBL:KGF69470.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7329_curated_8
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8596..9831)
DNA (1236bp) protein (412aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00038100EA
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:KGF69475.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_9
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9845..10501)
DNA (657bp) protein (219aa)
class II aldolase/adducin family protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
UPI0003CFDF15 related cluster n=1 Tax=unknown RepID=UPI0003CFDF15
Fuculose phosphate aldolase {ECO:0000313|EMBL:KGF69474.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_7329_curated_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10505..11833)
DNA (1329bp) protein (443aa)
Type III effector Hrp-dependent outer domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8A7_MESCW
Membrane protein {ECO:0000313|EMBL:EXL10539.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
type III effector Hrp-dependent outer domain-containing protein
SCNpilot_expt_1000_bf_scaffold_7329_curated_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11830..12888)
DNA (1059bp) protein (353aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8B0_MESCW
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL10540.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_7329_curated_12
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13237..13983
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VC61_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ14544.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7329_curated_13
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13872..14702)
DNA (831bp) protein (277aa)
Dipeptide ABC transporter permease n=2 Tax=Brucella RepID=C9V4D9_BRUNE
D-ala-D-ala transporter subunit {ECO:0000313|EMBL:KGF69473.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
dppC; peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Displaying 13 items

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