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SCNpilot_expt_1000_bf_scaffold_3990_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3990_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1479
DNA (1479bp) protein (493aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:EYR78670.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR78670.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsA7; ribose import ATP-binding protein RbsA (EC:3.6.3.17)
Ribose import ATP-binding protein RbsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYH7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3990_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1479..2540
DNA (1062bp) protein (354aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVN4_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR78671.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3990_curated_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2546..3580
DNA (1035bp) protein (345aa)
oxidoreductase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003616D56
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:EJT01702.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3990_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3577..5514
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000380A3B9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK12097.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3990_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5537..6430)
DNA (894bp) protein (298aa)
transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI00036ADDD4
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CAK08604.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3990_curated_6
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6547..7974
DNA (1428bp) protein (476aa)
GntR family transcriptional regulator n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GQN7_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ01407.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
transcriptional regulator with HTH domain and aminotransferase domain
SCNpilot_expt_1000_bf_scaffold_3990_curated_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7959..8864)
DNA (906bp) protein (302aa)
Enaminase protein {ECO:0000313|EMBL:AJD46259.1}; EC=3.5.2.18 {ECO:0000313|EMBL:AJD46259.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Enamidase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EFE01E
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3990_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9365..10189
DNA (825bp) protein (275aa)
fpr; ferredoxin-NADP+ reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Flavodoxin reductase family protein n=1 Tax=Rhizobium sp. AP16 RepID=J2CVB7_9RHIZ
Ferredoxin--NADP(+) reductase {ECO:0000313|EMBL:GAJ93734.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_3990_curated_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10303..11394
DNA (1092bp) protein (364aa)
Putative monooxygenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6F8_9RHIZ
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:KGD87363.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alkanesulfonate monooxygenase
SCNpilot_expt_1000_bf_scaffold_3990_curated_10
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11440..12537
DNA (1098bp) protein (366aa)
UPI0003CFABEF related cluster n=1 Tax=unknown RepID=UPI0003CFABEF
Uncharacterized protein {ECO:0000313|EMBL:ESZ32909.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3990_curated_11
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12685..13932
DNA (1248bp) protein (416aa)
ABC-type branched-chain amino acid transport systems periplasmic component n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRS0_9RHOB
ABC-type branched-chain amino acid transport systems periplasmic component {ECO:0000313|EMBL:EFL87838.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3990_curated_12
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14130..15263
DNA (1134bp) protein (378aa)
Iron-containing alcohol dehydrogenase; K00100 [EC:1.1.1.-]
4-hydroxybutyrate dehydrogenase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037C4D92
4-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KJK08100.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_3990_curated_13
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15480..16235
DNA (756bp) protein (252aa)
Transcriptional regulatory protein n=1 Tax=Sagittula stellata E-37 RepID=A3K5Q0_9RHOB
TetD protein {ECO:0000313|EMBL:KIT16237.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
transcriptional regulator
Displaying 13 items

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