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SCNpilot_expt_1000_bf_scaffold_2394_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2394_curated_1
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..950)
DNA (948bp) protein (316aa)
kdgK; 2-dehydro-3-deoxygluconokinase (EC:2.7.1.45)
2-dehydro-3-deoxygluconokinase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AAV3_RHIRD
2-dehydro-3-deoxygluconokinase {ECO:0000313|EMBL:KEQ09789.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1145..2800
DNA (1656bp) protein (552aa)
alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Probable alpha-glucosidase protein {ECO:0000313|EMBL:ACE92202.1}; EC=3.2.1.20 {ECO:0000313|EMBL:ACE92202.1};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable alpha-glucosidase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PVI2_RHIE6
SCNpilot_expt_1000_bf_scaffold_2394_curated_3
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..3288
DNA (357bp) protein (119aa)
UPI0003CFE94E related cluster n=1 Tax=unknown RepID=UPI0003CFE94E
Twitching motility protein PilT {ECO:0000313|EMBL:ESZ23469.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3285..3545
DNA (261bp) protein (87aa)
HicB family protein n=1 Tax=Rhizobium sp. CF080 RepID=J3AZH6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96892.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3613..4941)
DNA (1329bp) protein (443aa)
Omega amino acid--pyruvate transaminase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IG35_9RHIZ
Omega amino acid--pyruvate transaminase {ECO:0000313|EMBL:EPE97948.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
omega-amino acid--pyruvate aminotransferase
SCNpilot_expt_1000_bf_scaffold_2394_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5149..7452
DNA (2304bp) protein (768aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
cellulose 1,4-beta-cellobiosidase (EC:3.2.1.4 3.2.1.91); K01179 endoglucanase [EC:3.2.1.4]; K01225 cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003674BBB
SCNpilot_expt_1000_bf_scaffold_2394_curated_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7742..8059)
DNA (318bp) protein (106aa)
Transcriptional regulator protein (Repressor of nodulation genes) n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7U8_AGRRK
nolRch; transcriptional regulator protein (repressor of nodulation genes)
Putative transcriptional regulator {ECO:0000313|EMBL:EJK85849.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8159..8914)
DNA (756bp) protein (252aa)
Putative heme iron utilization protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BTB3_9RHIZ
Putative heme iron utilization protein {ECO:0000313|EMBL:EJL57204.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
pyridoxamine oxidase; K07226 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8959..10011)
DNA (1053bp) protein (351aa)
putative glycine betaine/L-proline ABC transporter, ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Putative glycine betaine/L-proline ABC transporter, ATP-binding protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MG53_RHISN
Putative glycine betaine/L-proline ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ACP26125.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10008..10844)
DNA (837bp) protein (279aa)
Proline/glycine betaine ABC transporter, permease protein n=2 Tax=Rhizobium etli RepID=B3PV67_RHIE6
proW; proline/glycine betaine ABC transporter permease; K02001 glycine betaine/proline transport system permease protein
Proline/glycine betaine ABC transporter, permease protein {ECO:0000313|EMBL:EGE56642.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10934..11884)
DNA (951bp) protein (317aa)
glycine/betaine ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037F015A
Proline/glycine betaine ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AHK45098.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12097..12480
DNA (384bp) protein (128aa)
Cytochrome c2 n=1 Tax=Rhizobium tropici CIAT 899 PF5_RHITR">RepID=L0LPF5_RHITR
cytochrome c2
Cytochrome c2 {ECO:0000313|EMBL:AGB71980.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12699..13787
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI000380EA4D
Uncharacterized protein {ECO:0000313|EMBL:EYR83484.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14277..15098
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7E3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEC77363.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15102..17018
DNA (1917bp) protein (639aa)
ATPase AAA n=1 Tax=Rhizobium giardinii RepID=UPI00035C3267
ATPase AAA {ECO:0000313|EMBL:KDP76201.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17067..17330
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036B8852
Uncharacterized protein {ECO:0000313|EMBL:EKF60127.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_17
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17330..17761
DNA (432bp) protein (144aa)
XRE family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QG92_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF60126.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_18
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17768..19066
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037150FD
Putative uncharacterized protein {ECO:0000313|EMBL:EHK74064.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_19
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19313..20173
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NGW3_RHISP
Membrane protein {ECO:0000313|EMBL:KEQ09831.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20204..20656)
DNA (453bp) protein (151aa)
PAS domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SB46_9RHIZ
PAS domain-containing protein {ECO:0000313|EMBL:CDN48748.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20679..21401)
DNA (723bp) protein (241aa)
Transcriptional regulator, LuxR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL58_RHITR
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGB71977.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_22
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21605..22117)
DNA (513bp) protein (171aa)
UPF0114 protein H009_24761 n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B658_RHIRD
hypothetical protein
UPF0114 protein RS75_08180 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_expt_1000_bf_scaffold_2394_curated_23
Amphimedon queenslandica, Amphimedon, Haplosclerida, Demospongiae, Porifera, Metazoa

Not on your lists

comp(22335..23216)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Amphimedon queenslandica RepID=I1EUI0_AMPQE
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15707424}; TaxID=400682 species="Eukaryota; Metazoa; Porifera; Demospongiae; Haplosclerida; Niphatidae; Amphimedon.;" source="Amphimedon queenslandica (Sponge).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_24
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23488..24045
DNA (558bp) protein (186aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
formate--tetrahydrofolate ligase n=1 Tax=Rhizobium mongolense RepID=UPI0003B67C04
SCNpilot_expt_1000_bf_scaffold_2394_curated_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24188..24517
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BV57_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96178.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_26
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24508..24918)
DNA (411bp) protein (137aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F038_9RHIZ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EHS53963.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
casR; transcription regulator TetR
SCNpilot_expt_1000_bf_scaffold_2394_curated_27
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25173..25979)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003722BCF
Extensin family protein {ECO:0000313|EMBL:EHK74662.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
extensin family protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26257..28494
DNA (2238bp) protein (746aa)
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UB68_RHIRD
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor {ECO:0000313|EMBL:EGP56317.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_2394_curated_29
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28773..30962
DNA (2190bp) protein (730aa)
Anthranilate synthase {ECO:0000313|EMBL:AJD42027.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AJD42027.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
trpE; anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27]
anthranilate synthase subunit I n=1 Tax=Rhizobium mongolense RepID=UPI0003B63EAD
SCNpilot_expt_1000_bf_scaffold_2394_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31210..31788)
DNA (579bp) protein (193aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V266_9RHIZ
Displaying items 1-30 of 33 in total

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