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SCNpilot_expt_1000_bf_scaffold_1486_curated_20

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(20169..20888)

Top 3 Functional Annotations

Value Algorithm Source
Pilus (Caulobacter type) biogenesis lipoprotein CpaD n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4B4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 61.6
  • Coverage: 219.0
  • Bit_score: 288
  • Evalue 5.60e-75
Pilus (Caulobacter type) biogenesis lipoprotein CpaD {ECO:0000313|EMBL:EHS52420.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.6
  • Coverage: 219.0
  • Bit_score: 288
  • Evalue 7.90e-75
ctpE; type IV pilus protein; K02281 pilus assembly protein CpaD similarity KEGG
DB: KEGG
  • Identity: 59.0
  • Coverage: 234.0
  • Bit_score: 282
  • Evalue 9.70e-74

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Taxonomy

Rhizobium sp. PDO1-076 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 720
ATGACGAATTTCAAAAACGCGATTTCCGGAAAAGACATGCTCATGCAGCCGATCCGCCCCTTCTTCCGCGCCGCCGCCATCACCCTGGTCGTGGCATCGGCCGGCATGCTCGCCGGCTGCGGCAACAATCGCGACCGGATGTCGACGGGGGCGATCCCCGACGACTACCGCACCCGCCATCCGATCTCGCTGGCCGAGGTCGAGCATACGCTCGACATTCCCGTCGGTTCCGGCGACCGGCGCCTGACGGTCGGCACCCGCGATGCGATCCATGGGTTCCTGGCGAACTACCGGACCGACGCTTCGGGCGTCTTCCAGATCCAGTATCCGGAGGGTTCGGCCAATGCGGCGGCCGCCTCCCATCTGCGGCGCGAGCTGCGCCAGGTGATGGCCGAGGCCGGCGTGCCGCGGCCGAAGATGGTCGAGACCGCCTACGGCGCCTCCCCGGACGGCGACGCGGCACCGATCCGCCTCAGCTACGTGGCGATCACCGCCATGACCAACGAATGCGGCCAGTGGCCGGAAGACATCACCAACAACACGGCCGAAAACAAGAACTACTACAATTTCGGCTGCGCCTCGCAGAGCAACCTTGCAGCCCAGATCGCCAATCCGATGGATCTGGTGGCGCCGCGCGGCATGACCCCGATCGATGCGAAGCGCCGGACGACGGTGATCGGATTGTATCGTGAAGGAAAGAGCGCCGCCACTGCGGAGTAA
PROTEIN sequence
Length: 240
MTNFKNAISGKDMLMQPIRPFFRAAAITLVVASAGMLAGCGNNRDRMSTGAIPDDYRTRHPISLAEVEHTLDIPVGSGDRRLTVGTRDAIHGFLANYRTDASGVFQIQYPEGSANAAAASHLRRELRQVMAEAGVPRPKMVETAYGASPDGDAAPIRLSYVAITAMTNECGQWPEDITNNTAENKNYYNFGCASQSNLAAQIANPMDLVAPRGMTPIDAKRRTTVIGLYREGKSAATAE*