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SCNpilot_expt_1000_bf_scaffold_1486_curated_21

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(20902..22476)

Top 3 Functional Annotations

Value Algorithm Source
Type II and III secretion system protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F498_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 71.0
  • Coverage: 518.0
  • Bit_score: 712
  • Evalue 3.40e-202
Type II and III secretion system protein {ECO:0000313|EMBL:EHS52419.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.0
  • Coverage: 518.0
  • Bit_score: 712
  • Evalue 4.80e-202
Flp pilus assembly protein, secretin CpaC similarity KEGG
DB: KEGG
  • Identity: 66.9
  • Coverage: 531.0
  • Bit_score: 692
  • Evalue 1.20e-196

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Taxonomy

Rhizobium sp. PDO1-076 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1575
ATGAGCGGGAGCGAGACAGTGAACACGAGAAAACAAAAAATCCGCGCTTCCATCGCCGGCGGCCTCTCCTTCTGCCTGGCGCTTTCGGGCCTGCCGGGCCAGGTCGTTCCGGGCCTCCCGAACGCGGGCGCCGCTTATGCCAGCGACACGGTGCTGCGCATCGCCCAGGCCGGTCCGGGTGTGCGCAAGCGCGTCAAGCTCGGCCTCAACAAGGCGATCGTCGTCGACCTGCCGACCGATGCCCACGATATCCTGGTGTCCGATCCGGAAATGGCCGATGCGGTGACCCGTACCTCGCGGCGCATCTACCTGTTCGGCAAGACGGTCGGCCAGACGAATATTTTCGTCTTCGGCCCGGGCGGTGAGGAGATCGTCAGCCTCGACATCGAGATCGAACGCGACATCACCGGCCTGCAGGCCAACCTGAAGCGCTTCATTCCGGAATCCGACATCAAGGTCGAGATCGTCTCCGACAACATCGTCCTGACCGGCAGCGTGCGCACGCCGCAGGATGCGGCCCAGGCCGAAAAGCTCGCCTCCGCCTTCCTCAAGGGCGGTGAAGCGACGACGCGCAACCAGGTCGCATCGAGCAACAGCAACGGTGACGGCGCCGTGGCGATCTTCGCGGAAGACCGCCAGCAATCGCAGATTGTCAACCTGCTCACCATCGAGGGCGAAGACCAGGTGATGCTGAAGGTCACCGTCGCCGAAGTCACCCGCTCCGTCATGAAGCAGCTTGGTTTCAGCGGCTCGATCGGCGGCCGCGACGGTGCGATCAGCTTCCGCAACCCCACCAACCTCGGCGCCTCCGCCGACTGGTTTACCGGCAACTACCTGACCGGCGGTTTCGGCGGCGTCGATATTTCCGCCTACATGAACGCCATGGAACAGGCTGGCGTCATGCGCACGCTTGCCGAGCCGAGCCTGACGGCGATTTCCGGCGAAGCGGCGCATTTCAAGGTGGGCGGCGAGTTCCGCCTGGCGTCGAGCCAGGAGATCAGCCAGGATGCCGATACCGGCAAGACGGTTGTCGAGCGTGAGAACGAGACGACGGAATACGGCATCGAGCTCAACTTCACGCCCGTCGTCCTGTCGCCGGGGCGCATCAGCCTGAAGGTCGAAACCAATGTTTCCGAACCGACCTTCGAAGGCTCGTTCGTCACCGCCGCCAACTATAACGTGCCGGGCGTGACCTATCTCGGCATTCGCAAGCGCGAGGCCTCCACCAGCGTCGAATTGCCTTCCGGCGGCTCGATCGTCATCGCCGGCTTGGTGCGCGACGACATGCGTCAGGCGGTTTCGGGGTTTCCCGGACTGTCGAAGATCCCGGTCATCGGCACGCTGTTCCGCAGCCGCGACTTCGTGCGCAACGAGACCGAAATGGTGATCATCGCCACGCCCTATCTGGTGCGTCCGGTCGCCCGCAACCAGCTTTCCCGGCCGGACGATAATTTCCAGCCGGAAAACGATGCCGCCGCCTTCTTCCTCAATCGTGTCAACAAGGTCTACGGCCGCAAGGAAAACATCCTTCCGGGCAGCCGCTACCACGGCACGATCGGCTTCATCTACAAGTAG
PROTEIN sequence
Length: 525
MSGSETVNTRKQKIRASIAGGLSFCLALSGLPGQVVPGLPNAGAAYASDTVLRIAQAGPGVRKRVKLGLNKAIVVDLPTDAHDILVSDPEMADAVTRTSRRIYLFGKTVGQTNIFVFGPGGEEIVSLDIEIERDITGLQANLKRFIPESDIKVEIVSDNIVLTGSVRTPQDAAQAEKLASAFLKGGEATTRNQVASSNSNGDGAVAIFAEDRQQSQIVNLLTIEGEDQVMLKVTVAEVTRSVMKQLGFSGSIGGRDGAISFRNPTNLGASADWFTGNYLTGGFGGVDISAYMNAMEQAGVMRTLAEPSLTAISGEAAHFKVGGEFRLASSQEISQDADTGKTVVERENETTEYGIELNFTPVVLSPGRISLKVETNVSEPTFEGSFVTAANYNVPGVTYLGIRKREASTSVELPSGGSIVIAGLVRDDMRQAVSGFPGLSKIPVIGTLFRSRDFVRNETEMVIIATPYLVRPVARNQLSRPDDNFQPENDAAAFFLNRVNKVYGRKENILPGSRYHGTIGFIYK*