ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1562_curated_24

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(25816..26379)

Top 3 Functional Annotations

Value Algorithm Source
Putative choline kinase involved in LPS biosynthesis n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EG40_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.8
  • Coverage: 187.0
  • Bit_score: 349
  • Evalue 1.60e-93
Putative choline kinase involved in LPS biosynthesis {ECO:0000313|EMBL:EYR82874.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.8
  • Coverage: 187.0
  • Bit_score: 349
  • Evalue 2.20e-93
choline/ethanolamine kinase similarity KEGG
DB: KEGG
  • Identity: 64.7
  • Coverage: 187.0
  • Bit_score: 247
  • Evalue 4.60e-63

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
TTGCGTGCCCTCAAGGCCTTCAACGATGCCGCGTCGCTTTCTTTGGTAAAAACCACCTTCGACATGATCGACGAGCATTTCCAGCAGGTGCTTGCGCTGGGCGGCGAGTTCCCGTCGGATTTCGGCTGGCTCAACGCCCGTTACCGCGAGGCACGGCAAGCGCTCGAAGCCTCCGGCCTCGACCTGGCGCCCTGCATGAACGATACGCTGGCCGGCAATTTCCTGCTGCATGCCGACCGCAGGGTGATGCTGGTCGATTTCGAATATGCCTCGACCAACGACCGCGCCGCGGAACTGGCCCTCTGGTTCAGCGAGATGTGTTTTTCGCCGGAGGTCGAAGCGGAACTGATCGAGGAATATTACGGCCGGATCGACGATGCCCTGCTGGCGCGGGTGTCGCTGTTCAAGGCGCTGGTCGATCTGAAATGGTCGACCTGGGCCATGGTGCAGAACCAGGTGTCCCGCCTCGATTTCGATTTCTTCAAATACGGCTTCTGGAAGCACATGCGCGCCCGTTTCGTGATGAGCGATCCGCGCTGGGCCGAATGGCTGAAGGCGGTTTAG
PROTEIN sequence
Length: 188
LRALKAFNDAASLSLVKTTFDMIDEHFQQVLALGGEFPSDFGWLNARYREARQALEASGLDLAPCMNDTLAGNFLLHADRRVMLVDFEYASTNDRAAELALWFSEMCFSPEVEAELIEEYYGRIDDALLARVSLFKALVDLKWSTWAMVQNQVSRLDFDFFKYGFWKHMRARFVMSDPRWAEWLKAV*