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SCNpilot_expt_1000_bf_scaffold_1562_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1562_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..232
DNA (231bp) protein (77aa)
GntR family transcriptional regulator n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LDT9_9PROT
Putative transcriptional regulator, LacI family {ECO:0000313|EMBL:AHK47203.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_1562_curated_2
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(272..1327)
DNA (1056bp) protein (352aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000361F81B
SCNpilot_expt_1000_bf_scaffold_1562_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1779..2942
DNA (1164bp) protein (388aa)
RND multidrug efflux membrane permease n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFE6_RHIRD
RND multidrug efflux membrane permease {ECO:0000313|EMBL:EGP55047.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_expt_1000_bf_scaffold_1562_curated_4
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2946..3923)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Cronobacter universalis NCTC 9529 RepID=K8DDG7_9ENTR
Tax=RBG_16_Gamma2_64_10_curated
SCNpilot_expt_1000_bf_scaffold_1562_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4188..6092
DNA (1905bp) protein (635aa)
RND multidrug efflux transporter n=2 Tax=Rhizobium radiobacter RepID=M8ACW0_RHIRD
RND multidrug efflux transporter {ECO:0000313|EMBL:EMS96088.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_expt_1000_bf_scaffold_1562_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6106..6717
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFE4_RHIRD
TetR family transcriptional regulator {ECO:0000313|EMBL:EGP55045.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1562_curated_7
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6934..7377
DNA (444bp) protein (148aa)
Transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HKH6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EPE99154.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
transcriptional regulator protein; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
SCNpilot_expt_1000_bf_scaffold_1562_curated_8
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7387..9078
DNA (1692bp) protein (564aa)
MFS permease n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5QHB5_9RHIZ
MFS permease {ECO:0000313|EMBL:EJT07303.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
rmrB; transporter
SCNpilot_expt_1000_bf_scaffold_1562_curated_9
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9098..10171
DNA (1074bp) protein (358aa)
hemolysin secretion protein D n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035FA72B
Multidrug resistance protein A homolog {ECO:0000313|EMBL:CDM57064.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
multidrug resistance efflux system protein
SCNpilot_expt_1000_bf_scaffold_1562_curated_10
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10537..11907
DNA (1371bp) protein (457aa)
EAL domain-containing protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8H5_9RHIZ
EAL domain-containing protein {ECO:0000313|EMBL:AKI01277.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1562_curated_11
unknown

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comp(12062..12262)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1562_curated_12
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12660..14030
DNA (1371bp) protein (457aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
otsA; protein OtsA; K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
alpha,alpha-trehalose-phosphate synthase n=1 Tax=Sinorhizobium medicae RepID=UPI0003794E1A
SCNpilot_expt_1000_bf_scaffold_1562_curated_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14109..15200)
DNA (1092bp) protein (364aa)
3-isopropylmalate/3-methylmalate dehydrogenase {ECO:0000313|EMBL:CDX32909.1}; EC=1.1.1.83 {ECO:0000313|EMBL:CDX32909.1};; EC=1.1.1.85 {ECO:0000313|EMBL:CDX32909.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
UPI0003CFA968 related cluster n=1 Tax=unknown RepID=UPI0003CFA968
SCNpilot_expt_1000_bf_scaffold_1562_curated_14
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15212..15592)
DNA (381bp) protein (127aa)
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:KJS11726.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KJS11726.1};; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
3-ketoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Putative 2-(S)-hydroxypropyl-CoM dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QDZ1_BREDI
SCNpilot_expt_1000_bf_scaffold_1562_curated_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16115..17611
DNA (1497bp) protein (499aa)
Betaine aldehyde dehydrogenase, NAD-dependent {ECO:0000313|EMBL:CDX15757.1}; EC=1.2.1.8 {ECO:0000313|EMBL:CDX15757.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
UPI0003CFB029 related cluster n=1 Tax=unknown RepID=UPI0003CFB029
aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1562_curated_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17818..18606)
DNA (789bp) protein (263aa)
LysR substrate-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC5_MESCW
LysR substrate-binding protein {ECO:0000313|EMBL:CDX32901.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1562_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18791..20284)
DNA (1494bp) protein (498aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:CDX32899.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX32899.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC4_MESCW
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1562_curated_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20281..21372)
DNA (1092bp) protein (364aa)
NHL repeat containing protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC3_MESCW
NHL repeat containing protein {ECO:0000313|EMBL:CDX32897.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
NHL repeat containing protein
SCNpilot_expt_1000_bf_scaffold_1562_curated_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21369..22427)
DNA (1059bp) protein (353aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC2_MESCW
Inner-membrane translocator {ECO:0000313|EMBL:CDX32895.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1562_curated_20
unknown

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22559..22750
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1562_curated_21
unknown

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23210..23428
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1562_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23473..24489)
DNA (1017bp) protein (339aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC1_MESCW
ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDX32893.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1562_curated_23
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24522..25511)
DNA (990bp) protein (330aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDC0_MESCW
Inner-membrane translocator {ECO:0000313|EMBL:CDX46704.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_1562_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25816..26379)
DNA (564bp) protein (188aa)
Putative choline kinase involved in LPS biosynthesis n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EG40_9RHIZ
Putative choline kinase involved in LPS biosynthesis {ECO:0000313|EMBL:EYR82874.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
choline/ethanolamine kinase
SCNpilot_expt_1000_bf_scaffold_1562_curated_25
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26768..27031)
DNA (264bp) protein (88aa)
Rcorf38 n=1 Tax=Agrobacterium rhizogenes RepID=A8W001_AGRRH
Rcorf38 {ECO:0000313|EMBL:ABW33595.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1562_curated_26
unknown

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27132..27800
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1562_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27703..28983)
DNA (1281bp) protein (427aa)
allantoate amidohydrolase (EC:3.5.1.87); K01431 beta-ureidopropionase [EC:3.5.1.6]
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN12_9RHIZ
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:EYR82872.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1562_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28976..29734)
DNA (759bp) protein (253aa)
Glycerol-3-phosphate regulon repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDN3_9RHIZ
Transcriptional regulator DeoR family {ECO:0000313|EMBL:EYR82871.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DeoR family transcriptional regulator; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
SCNpilot_expt_1000_bf_scaffold_1562_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(29724..30050)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium radiobacter RepID=K7XK46_RHIRD
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EYR82870.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative substrate-binding component of ABC transporter
Displaying 29 items

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