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SCNpilot_cont_750_bf_scaffold_414_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_414_curated_1
bacterium YEK0313, Bacteria

Not on your lists

comp(2..235)
DNA (234bp) protein (78aa)
hypothetical protein, partial n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036D3FBC
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM {ECO:0000313|EMBL:CEJ10947.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_cont_750_bf_scaffold_414_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240..1286)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037F3880
siaP; TRAP dicarboxylate transporter-DctP subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_750_bf_scaffold_414_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1420..3072)
DNA (1653bp) protein (551aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000376BA02
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_750_bf_scaffold_414_curated_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3163..4683)
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000364C2B0
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EIM26602.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
beta-lactamase
SCNpilot_cont_750_bf_scaffold_414_curated_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4698..6851)
DNA (2154bp) protein (718aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8R1_9RHIZ
Amylo-alpha-16-glucosidase {ECO:0000313|EMBL:GAN77334.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_414_curated_6
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6922..7353
DNA (432bp) protein (144aa)
Phenylacetic acid degradation-related protein:Thioesterase superfamily n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4Y5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF68813.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_414_curated_7
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7632..8591
DNA (960bp) protein (320aa)
4-hydroxy-2-ketovalerate aldolase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
HMGL-like protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV10_9PROT
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:GAJ37929.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_cont_750_bf_scaffold_414_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8592..9794
DNA (1203bp) protein (401aa)
III protein, CoA-transferase family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV09_9PROT
III protein, CoA-transferase family {ECO:0000313|EMBL:EHM03176.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_750_bf_scaffold_414_curated_9
unknown

Not on your lists

9844..10053
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_414_curated_10
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10223..12901
DNA (2679bp) protein (893aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Phosphorylase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGT3_AZOBR
glgP; glycogen phosphorylase
SCNpilot_cont_750_bf_scaffold_414_curated_11
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..13375)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YAF9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAW33113.1}; TaxID=247633 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; BD1-7 clade.;" source="marine gamma proteobacterium HTCC2143.;"
NIPSNAP family containing protein
SCNpilot_cont_750_bf_scaffold_414_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13474..14763)
DNA (1290bp) protein (430aa)
Methyl-accepting chemotaxis receptor/sensory transducer n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N8H2_RHOPA
methyl-accepting chemotaxis receptor/sensory transducer rbh
Methyl-accepting chemotaxis receptor/sensory transducer {ECO:0000313|EMBL:CAE27372.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_750_bf_scaffold_414_curated_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14913..15383)
DNA (471bp) protein (157aa)
Cellulose synthase operon protein D n=3 Tax=Gluconacetobacter RepID=ACSD_GLUXY
Methylobacterium aquaticum plasmid pMaq22A_2p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ50107.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
cellulose synthase operon protein D
SCNpilot_cont_750_bf_scaffold_414_curated_14
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15386..19141)
DNA (3756bp) protein (1252aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FC50EB
Methylobacterium aquaticum plasmid pMaq22A_2p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ50106.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
cellulose synthase operon protein C
SCNpilot_cont_750_bf_scaffold_414_curated_15
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19148..23929)
DNA (4782bp) protein (1594aa)
Cellulose synthase 1; Includes:; Cellulose synthase catalytic domain [UDP-forming]; EC=2.4.1.12;; Includes:; Cyclic di-GMP-binding domain; Cellulose synthase 1 regulatory domain; TaxID=436 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii (Gluconacetobacter hansenii).;"
cellulose synthase catalytic subunit; K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12]
Cellulose synthase 1 n=1 Tax=Gluconacetobacter hansenii RepID=ACSA1_GLUHA rbh
SCNpilot_cont_750_bf_scaffold_414_curated_16
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23926..24726)
DNA (801bp) protein (267aa)
Cellulose synthase operon protein YhjQ n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV91_9PROT
Cellulose synthase operon protein YhjQ {ECO:0000313|EMBL:EHM03105.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
cellulose biosynthesis protein
SCNpilot_cont_750_bf_scaffold_414_curated_17
Colletotrichum orbiculare, Colletotrichum, Glomerellales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

comp(24833..25744)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9AEK6_LEIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENH79709.1}; TaxID=1213857 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum.;" source="Colletotrichum orbiculare (strain 104-T / ATCC 96160 / CBS 514.97 /; LARS 414 / MAFF 240422) (Cucumber anthracnose fungus) (Colletotrichum; lagenarium).;"
SCNpilot_cont_750_bf_scaffold_414_curated_18
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25842..27020)
DNA (1179bp) protein (393aa)
Glucanase {ECO:0000256|RuleBase:RU361167}; EC=3.2.1.- {ECO:0000256|RuleBase:RU361167};; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Putative endoglucanase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVX3_9PROT
endo-1,4-beta-glucanase
SCNpilot_cont_750_bf_scaffold_414_curated_19
unknown

Not on your lists

27208..27438
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EB2677
SCNpilot_cont_750_bf_scaffold_414_curated_20
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27497..28414)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000365C757
LysR family transcriptional regulator {ECO:0000313|EMBL:KEZ07744.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
LysR family regulatory protein
SCNpilot_cont_750_bf_scaffold_414_curated_21
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28484..32119
DNA (3636bp) protein (1212aa)
Transport ATP-binding protein CydCD n=1 Tax=Burkholderia cenocepacia H111 RepID=G7HC25_9BURK
ABC transporter {ECO:0000313|EMBL:KFL54748.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
ABC transporter ATP-binding membrane protein; K06148 ATP-binding cassette, subfamily C, bacterial
SCNpilot_cont_750_bf_scaffold_414_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32139..33845
DNA (1707bp) protein (569aa)
phytochrome; K07675 two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
Phytochrome n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q132I0_RHOPS
Phytochrome {ECO:0000313|EMBL:ABE41009.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_414_curated_23
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33842..34501
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPV5_METSB
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACK50959.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_750_bf_scaffold_414_curated_24
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34708..35970
DNA (1263bp) protein (421aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8D9_PELHB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEQ52383.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_750_bf_scaffold_414_curated_25
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36330..37760
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXZ7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM99627.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_414_curated_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38473..40551)
DNA (2079bp) protein (693aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; DNA ligase; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=DNLJ_GRABC rbh
SCNpilot_cont_750_bf_scaffold_414_curated_27
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40548..42245)
DNA (1698bp) protein (566aa)
DNA repair protein RecN n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV34_GRABC
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
DNA repair protein recN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_cont_750_bf_scaffold_414_curated_28
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42268..43122)
DNA (855bp) protein (285aa)
Outer membrane protein assembly factor BamD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV33_GRABC
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
ComL family lipoprotein; K05807 putative lipoprotein
SCNpilot_cont_750_bf_scaffold_414_curated_29
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43169..43900)
DNA (732bp) protein (244aa)
putative N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5E9_9PROT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EHL97643.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_750_bf_scaffold_414_curated_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44000..44782)
DNA (783bp) protein (261aa)
Heat shock protein DnaJ domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2J2_ACICJ
Heat shock protein DnaJ-like protein DjlA {ECO:0000313|EMBL:GAN78320.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
DnaJ family protein; K05801 DnaJ like chaperone protein
Displaying items 1-30 of 45 in total

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