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SCNpilot_expt_1000_bf_scaffold_2600_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2600_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..289
DNA (288bp) protein (96aa)
DNA polymerase IV; K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA polymerase IV n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL26_NIAKG
SCNpilot_expt_1000_bf_scaffold_2600_curated_2
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(298..1101)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W078_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK36039.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_3
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1111..1362)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KIA92258.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
SCNpilot_expt_1000_bf_scaffold_2600_curated_4
unknown

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1392..1637
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_5
unknown

Not on your lists

1715..2242
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_6
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3268..3660
DNA (393bp) protein (131aa)
Single-stranded DNA-binding protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JP55_9FLAO
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
single-strand binding protein/primosomal replication protein n; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_7
unknown

Not on your lists

4892..5077
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5283..5537
DNA (255bp) protein (85aa)
Regulatory protein GntR HTH n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T816_NIAKG
GntR family transcriptional regulator {ECO:0000313|EMBL:KIC93023.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
regulatory protein GntR HTH
SCNpilot_expt_1000_bf_scaffold_2600_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5480..5968
DNA (489bp) protein (163aa)
Regulatory protein GntR HTH n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY01_PEDHD
GntR family transcriptional regulator {ECO:0000313|EMBL:KIC93023.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2600_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6099..7283
DNA (1185bp) protein (395aa)
Glycosyl hydrolase BNR repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8S2_NIAKG
glycosyl hydrolase family protein
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AEW01252.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_2600_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7312..8010
DNA (699bp) protein (233aa)
TonB-dependent receptor plug n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ0_9SPHI
TonB-linked outer membrane protein {ECO:0000313|EMBL:AHF16454.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Outer membrane receptor proteins, mostly Fe transport
SCNpilot_expt_1000_bf_scaffold_2600_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8168..10525
DNA (2358bp) protein (786aa)
TonB-dependent receptor plug n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ0_9SPHI
TonB-linked outer membrane protein {ECO:0000313|EMBL:AHF16454.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Outer membrane receptor proteins, mostly Fe transport
SCNpilot_expt_1000_bf_scaffold_2600_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10538..10795
DNA (258bp) protein (86aa)
RagB/SusD domain-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ1_9SPHI
Glycan metabolism protein RagB {ECO:0000313|EMBL:AHF16455.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2600_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10926..11912
DNA (987bp) protein (329aa)
RagB/SusD domain-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ1_9SPHI
Glycan metabolism protein RagB {ECO:0000313|EMBL:AHF16455.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SusD family.
SCNpilot_expt_1000_bf_scaffold_2600_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11925..13046
DNA (1122bp) protein (374aa)
BNR/Asp-box repeat. (EC:3.2.1.18)
Glycosyl hydrolase BNR repeat-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16456.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2600_curated_16
unknown

Not on your lists

14372..14485
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14560..15726
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJW7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14087.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_18
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15797..17458
DNA (1662bp) protein (554aa)
glycosyl hydrolase family protein (EC:3.2.1.18); K01186 sialidase-1 [EC:3.2.1.18]
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:ACU04418.1}; EC=3.2.1.18 {ECO:0000313|EMBL:ACU04418.1};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037DA33B
SCNpilot_expt_1000_bf_scaffold_2600_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17461..18405
DNA (945bp) protein (315aa)
N-acetylneuraminate lyase (EC:4.1.3.3); K01639 N-acetylneuraminate lyase [EC:4.1.3.3]
N-acetylneuraminate lyase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ5_9SPHI
N-acetylneuraminate lyase {ECO:0000313|EMBL:AHF16458.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2600_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18452..19504
DNA (1053bp) protein (351aa)
Kelch repeat type 1-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ6_9SPHI
Galactose oxidase {ECO:0000313|EMBL:AHF16459.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Kelch repeat type 1-containing protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19510..20775
DNA (1266bp) protein (422aa)
Major facilitator superfamily MFS_1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQQ7_9SPHI
MFS transporter {ECO:0000313|EMBL:AHF16460.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_22
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21357..22223
DNA (867bp) protein (289aa)
alpha-galactosidase; K07407 alpha-galactosidase [EC:3.2.1.22]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003672A11
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_2600_curated_23
unknown

Not on your lists

22604..22873
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_24
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23053..23496)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000364E097
Uncharacterized protein {ECO:0000313|EMBL:EOS16732.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
VRR-NUC domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2600_curated_25
unknown

Not on your lists

comp(23493..23678)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_26
unknown

Not on your lists

comp(24322..24414)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_27
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24783..26207)
DNA (1425bp) protein (475aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H510_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHB93527.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;"
P4 family phage/plasmid primase; K06919 putative DNA primase/helicase
SCNpilot_expt_1000_bf_scaffold_2600_curated_28
unknown

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comp(26204..26512)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_29
unknown

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comp(26525..26794)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2600_curated_30
unknown

Not on your lists

comp(26928..27860)
DNA (933bp) protein (311aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

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