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SCNpilot_expt_1000_bf_scaffold_1374_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1374_curated_1
unknown

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1..426
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1374_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(530..2677)
DNA (2148bp) protein (716aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase P n=1 Tax=Niabella aurantiaca RepID=UPI000378EF97
ATPase P {ECO:0000313|EMBL:AHF15865.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2893..3318
DNA (426bp) protein (142aa)
ATP/GTP hydrolase n=1 Tax=Niabella aurantiaca RepID=UPI00036A5034
ATP/GTP hydrolase {ECO:0000313|EMBL:AHF15928.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1374_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3416..4630
DNA (1215bp) protein (405aa)
Alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
alanine dehydrogenase n=1 Tax=Niabella aurantiaca RepID=UPI0003699B35
Alanine dehydrogenase {ECO:0000313|EMBL:AHF15927.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4668..5270
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A489E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE49287.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_6
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5356..5769
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000372A783
Uncharacterized protein {ECO:0000313|EMBL:KFF74709.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1374_curated_7
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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5961..8738
DNA (2778bp) protein (926aa)
N-6 DNA Methylase n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z8S6_BELBD
N-6 DNA methylase
N-6 DNA Methylase {ECO:0000313|EMBL:AFL85644.1}; TaxID=866536 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Belliella.;" source="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_8
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8735..9727
DNA (993bp) protein (331aa)
Virulence protein n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z0K0_BELBD
virulence protein
Virulence protein {ECO:0000313|EMBL:AFL82768.1}; TaxID=866536 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Belliella.;" source="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_9
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9741..10103
DNA (363bp) protein (121aa)
CHP02436-containing protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P2R4_WEEVC
hypothetical protein
CHP02436-containing protein {ECO:0000313|EMBL:ADX66804.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_10
Bacteroides sp. 2_1_56FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10128..12098
DNA (1971bp) protein (657aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_56FAA RepID=F7LT16_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGN05809.1}; TaxID=665938 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_56FAA.;"
DEAD-like helicase
SCNpilot_expt_1000_bf_scaffold_1374_curated_11
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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12119..13324
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG86_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45752.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_12
unknown

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comp(13308..13418)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1374_curated_13
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(13438..14220)
DNA (783bp) protein (261aa)
NIPSNAP family containing protein id=1809361 bin=GWD2_Bacteroidales_45_23 species=Niabella soli genus=Niabella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
NIPSNAP family containing protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_expt_1000_bf_scaffold_1374_curated_14
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(14331..15998)
DNA (1668bp) protein (556aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003789211
alpha-L-rhamnosidase
Alpha-L-rhamnosidase {ECO:0000313|EMBL:ADZ77026.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_15
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17121..18548)
DNA (1428bp) protein (476aa)
L-arabinose isomerase protein; K01804 L-arabinose isomerase [EC:5.3.1.4]
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Putative L-arabinose isomerase protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZD8_PEDHD
SCNpilot_expt_1000_bf_scaffold_1374_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(18715..20196)
DNA (1482bp) protein (494aa)
sialate O-acetylesterase; K05970 sialate O-acetylesterase [EC:3.1.1.53]
Sialate O-acetylesterase {ECO:0000313|EMBL:ACU59079.1}; EC=3.1.1.53 {ECO:0000313|EMBL:ACU59079.1};; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Sialate O-acetylesterase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT40_CHIPD
SCNpilot_expt_1000_bf_scaffold_1374_curated_17
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20193..22199)
DNA (2007bp) protein (669aa)
Chondroitin AC lyase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV46_PEDHD
chondroitin AC lyase
Chondroitin AC lyase {ECO:0000313|EMBL:ACU06054.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_1374_curated_18
unknown

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comp(22312..22602)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1374_curated_19
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(22605..24494)
DNA (1890bp) protein (630aa)
Glycoside hydrolase 97 id=2170032 bin=GWE2_Bacteroidetes_42_39 species=Niabella soli genus=Niabella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
glycoside hydrolase
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_1374_curated_20
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(24498..26234)
DNA (1737bp) protein (579aa)
RagB/SusD domain protein id=3857892 bin=GWF2_Bacteroidetes_42_66 species=Parabacteroides sp. ASF519 genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
RagB/SusD domain-containing protein
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_1374_curated_21
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(26245..27093)
DNA (849bp) protein (283aa)
SusC/RagA family TonB-linked outer membrane protein id=3857891 bin=GWF2_Bacteroidetes_42_66 species=Parabacteroides sp. ASF519 genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
TonB-dependent receptor plug
Tax=GWE2_Bacteroidetes_42_39_curated
Displaying 21 items

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