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SCNpilot_expt_500_bf_scaffold_2424_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2424_curated_1
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..204)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ30149.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
SCNpilot_expt_500_bf_scaffold_2424_curated_2
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(436..771)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RVZ6_LEAB4
Uncharacterized protein {ECO:0000313|EMBL:KEQ30150.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2424_curated_3
unknown

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817..1014
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2424_curated_4
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1141..1986
DNA (846bp) protein (282aa)
regulatory protein RteC family protein n=1 Tax=Empedobacter brevis RepID=UPI00037ED746
Tetracycline regulation of excision, RteC {ECO:0000313|EMBL:AIM38363.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
RteC protein
SCNpilot_expt_500_bf_scaffold_2424_curated_5
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2337..2645
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZB7_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA07292.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2424_curated_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2734..4197
DNA (1464bp) protein (488aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZB8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK56968.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2424_curated_7
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4219..6303
DNA (2085bp) protein (695aa)
DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase III n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZB9_9FLAO
DNA topoisomerase III {ECO:0000313|EMBL:ADY52202.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_500_bf_scaffold_2424_curated_8
unknown

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6361..6789
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2424_curated_9
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7098..7808
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ47_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM34561.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2424_curated_10
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8462..8896
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RTG1_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ15975.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_500_bf_scaffold_2424_curated_11
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8886..13250
DNA (4365bp) protein (1455aa)
Helicase family protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2KMN5_9FLAO
Helicase family protein {ECO:0000313|EMBL:EJL74358.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
N-6 DNA methylase
Displaying 11 items

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