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SCNpilot_cont_300_bf_scaffold_626_curated

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_626_curated_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..280)
DNA (279bp) protein (93aa)
Haloacetate dehalogenase H-2 {ECO:0000313|EMBL:KGB55752.1}; EC=3.8.1.3 {ECO:0000313|EMBL:KGB55752.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
Putative uncharacterized protein n=1 Tax=Aspergillus terreus (strain NIH 2624 / FGSC A1156) RepID=Q0CD34_ASPTN
HAD-superfamily hydrolase
SCNpilot_cont_300_bf_scaffold_626_curated_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(468..1358)
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AS48_AZOBR
LysR family transcriptional regulator {ECO:0000313|EMBL:KGB55753.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_626_curated_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1426..3849)
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5EDF7
Peptidase S45, penicillin amidase {ECO:0000313|EMBL:KGB55755.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
peptidase S45 family protein
SCNpilot_cont_300_bf_scaffold_626_curated_4
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3878..6145)
DNA (2268bp) protein (756aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B518C2
TonB-dependent receptor {ECO:0000313|EMBL:KGB53963.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_626_curated_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6623..8710
DNA (2088bp) protein (696aa)
PREDICTED: dipeptidyl-peptidase 5-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10343
putative S9 family peptidase
Putative S9 family peptidase {ECO:0000313|EMBL:AGH48237.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_626_curated_6
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8778..9683)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IES3_BEII9
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_626_curated_7
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9795..11225
DNA (1431bp) protein (477aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
isopropylmalate isomerase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5A458
SCNpilot_cont_300_bf_scaffold_626_curated_8
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11222..11830
DNA (609bp) protein (203aa)
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IES5_BEII9
SCNpilot_cont_300_bf_scaffold_626_curated_9
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11812..12741
DNA (930bp) protein (310aa)
alpha/beta hydrolase fold protein; K01561 haloacetate dehalogenase [EC:3.8.1.3]
fluoroacetate dehalogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5EAB2
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ACB97016.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_626_curated_10
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12826..14133
DNA (1308bp) protein (436aa)
C4-dicarboxylate transport protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=DCTA_CHRVO rbh
dctA; C4-dicarboxylic acids transport protein (Na+/H+ dicarboxylate symporter); K11103 aerobic C4-dicarboxylate transport protein rbh
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
SCNpilot_cont_300_bf_scaffold_626_curated_11
unknown

Not on your lists

14298..14690
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_626_curated_12
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14711..15559)
DNA (849bp) protein (283aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; EC=3.1.4.17 {ECO:0000256|HAMAP-Rule:MF_00905};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas her
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1E9_SPHCR
metallophosphoesterase
SCNpilot_cont_300_bf_scaffold_626_curated_13
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15573..17384)
DNA (1812bp) protein (604aa)
Cytochrome C family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1F0_SPHCR
Cytochrome C family protein {ECO:0000313|EMBL:KEQ51604.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
cytochrome C family protein
SCNpilot_cont_300_bf_scaffold_626_curated_14
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17389..18273)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5BHE2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIM68994.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_626_curated_15
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18273..20798)
DNA (2526bp) protein (842aa)
Iron-sulfur protein n=1 Tax=Sphingobium indicum B90A RepID=I5BHE3_9SPHN
Oxidoreductase {ECO:0000313|EMBL:KER37149.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
iron-sulfur protein
SCNpilot_cont_300_bf_scaffold_626_curated_16
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20940..21863
DNA (924bp) protein (308aa)
Tetratricopeptide TPR_2 repeat-containing protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1F3_SPHCR
hypothetical protein; K02200 cytochrome c-type biogenesis protein CcmH
Tetratricopeptide TPR_2 repeat-containing protein {ECO:0000313|EMBL:AEG51369.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_626_curated_17
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21871..22731)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMY8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11980.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_626_curated_18
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22839..24419)
DNA (1581bp) protein (527aa)
EmrB/QacA family drug resistance transporter n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L9V6_9SPHN
EmrB/QacA family drug resistance transporter {ECO:0000313|EMBL:EIZ81304.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
emrB4; multidrug resistance protein B
SCNpilot_cont_300_bf_scaffold_626_curated_19
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24416..25474)
DNA (1059bp) protein (353aa)
Membrane fusion protein family auxiliary transport protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CCY9_9SPHN
Membrane fusion protein family auxiliary transport protein {ECO:0000313|EMBL:EIZ81305.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
emrA5; multidrug resistance protein A
SCNpilot_cont_300_bf_scaffold_626_curated_20
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25533..27020)
DNA (1488bp) protein (496aa)
NodT family efflux transporter outer membrane factor lipoprotein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WLU3_9SPHN
NodT family efflux transporter outer membrane factor lipoprotein {ECO:0000313|EMBL:EIZ81306.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_626_curated_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27105..27890
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037696D4
AraC family transcriptional regulator {ECO:0000313|EMBL:KGM35896.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_626_curated_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28087..30489)
DNA (2403bp) protein (801aa)
Secretin and TonB N terminus short domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW38_9SPHN
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAM02437.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_626_curated_23
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30590..31522)
DNA (933bp) protein (311aa)
FecR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW39_9SPHN
Putative transmembrane sensor {ECO:0000313|EMBL:GAM02438.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_626_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31611..32129)
DNA (519bp) protein (173aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW40_9SPHN
DNA, contig: SP663 {ECO:0000313|EMBL:GAN15690.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_626_curated_25
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32383..33102
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW44_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02443.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_626_curated_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33274..33717
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CP43_STEMA
Uncharacterized protein {ECO:0000313|EMBL:CCP12213.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_626_curated_27
unknown

Not on your lists

33714..34028
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_626_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34005..34655)
DNA (651bp) protein (217aa)
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EYR82234.1}; EC=1.14.11.33 {ECO:0000313|EMBL:EYR82234.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-N1-methyladenine dioxygenase (EC:1.14.11.-); K03919 alkylated DNA repair protein [EC:1.14.11.-]
dioxygenase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D0C45
SCNpilot_cont_300_bf_scaffold_626_curated_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34846..35973
DNA (1128bp) protein (376aa)
Peptidase M19 family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S277_9SPHN
peptidase M19 family protein
Peptidase M19 family protein {ECO:0000313|EMBL:AGH50115.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_626_curated_30
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35978..37282)
DNA (1305bp) protein (435aa)
molecular chaperone Hsp70 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B55A3C
Molecular chaperone DnaK {ECO:0000313|EMBL:KGB55113.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
molecular chaperone DnaK
Displaying items 1-30 of 70 in total

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