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SCNpilot_cont_300_bf_scaffold_554_curated

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_554_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2109)
DNA (2109bp) protein (703aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AJP72130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037A8279
SCNpilot_cont_300_bf_scaffold_554_curated_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2522..4441
DNA (1920bp) protein (640aa)
glutaryl-7-ACA acylase n=1 Tax=Sphingomonas melonis RepID=UPI00036A7B48
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EZP55005.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
peptidase S15; K06978
SCNpilot_cont_300_bf_scaffold_554_curated_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4484..5710
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTK9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP57295.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
GG17156 gene product from transcript GG17156-RA
SCNpilot_cont_300_bf_scaffold_554_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5835..6218)
DNA (384bp) protein (128aa)
50S ribosomal protein L7 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369629A
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplL; ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_300_bf_scaffold_554_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6286..6801)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Sphingomonas melonis RepID=UPI00036DD128
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplJ; ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_cont_300_bf_scaffold_554_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7137..8306)
DNA (1170bp) protein (390aa)
lactate 2-monooxygenase (EC:1.13.12.4)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378E16D
Sphingomonas taxi strain 30a NODE_39, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26799.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_554_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8366..10291)
DNA (1926bp) protein (642aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYF0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AIT06707.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_554_curated_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10606..11298)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4A755
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_cont_300_bf_scaffold_554_curated_9
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11301..11732)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5ABD8
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_cont_300_bf_scaffold_554_curated_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11888..12901)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FDEA
Uncharacterized protein {ECO:0000313|EMBL:EZP52986.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_554_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12982..14310)
DNA (1329bp) protein (443aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364EE81
signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_554_curated_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14321..15058)
DNA (738bp) protein (246aa)
chemotaxis protein CheY n=2 Tax=Sphingomonas RepID=UPI000287B5AA
Putative two-component response regulator {ECO:0000313|EMBL:GAL99664.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
CheY-like response regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_300_bf_scaffold_554_curated_13
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15157..15747)
DNA (591bp) protein (197aa)
UPI0003CFB178 related cluster n=1 Tax=unknown RepID=UPI0003CFB178
Uncharacterized protein {ECO:0000313|EMBL:ESZ86076.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_554_curated_14
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15898..16683)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367DF1E
Uncharacterized protein {ECO:0000313|EMBL:KHA65651.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_554_curated_15
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16680..18212)
DNA (1533bp) protein (511aa)
4-coumarate--CoA ligase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1CB
4-coumarate--CoA ligase {ECO:0000313|EMBL:KHA65650.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
amp-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_554_curated_16
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18284..19072
DNA (789bp) protein (263aa)
SDR-family protein; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003790142
SDR-family protein {ECO:0000313|EMBL:EIM69058.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_cont_300_bf_scaffold_554_curated_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19126..20334)
DNA (1209bp) protein (403aa)
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630ACA
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29167.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
major facilitator transporter; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_cont_300_bf_scaffold_554_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20622..21842
DNA (1221bp) protein (407aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376FCDB
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29166.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_554_curated_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21951..23015
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375994D
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29144.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_554_curated_20
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23260..24102
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B77A7E
AraC family transcriptional regulator {ECO:0000313|EMBL:KHS43876.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_554_curated_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24241..25485)
DNA (1245bp) protein (415aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI00036684C3
TetR family transcriptional regulator {ECO:0000313|EMBL:AIT05906.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_554_curated_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25641..26948
DNA (1308bp) protein (436aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B43C9
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHA65648.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_554_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27094..28182
DNA (1089bp) protein (363aa)
zinc-binding alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036118E0
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29142.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_554_curated_24
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28179..29237
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365B67E
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KHA65653.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_cont_300_bf_scaffold_554_curated_25
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29253..30017
DNA (765bp) protein (255aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381E72D
Short-chain dehydrogenase {ECO:0000313|EMBL:KHA65652.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_554_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30160..30957
DNA (798bp) protein (266aa)
oxidoreductase n=1 Tax=Sphingomonas melonis RepID=UPI000381460B
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29139.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_554_curated_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31000..32832)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GM54_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL31280.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_554_curated_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32941..33873)
DNA (933bp) protein (311aa)
palmitoyl-CoA hydrolase (EC:3.1.2.2); K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375ED95
Acyl-CoA thioesterase {ECO:0000313|EMBL:KHA65644.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_554_curated_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33979..35106)
DNA (1128bp) protein (376aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003747500
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AIT05900.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_cont_300_bf_scaffold_554_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35207..36391)
DNA (1185bp) protein (395aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003709B8B
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71897.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying items 1-30 of 36 in total

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