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SCNpilot_cont_300_bf_scaffold_2077_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2077_curated_1
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(150..1298)
DNA (1149bp) protein (383aa)
Transcriptional regulator, LuxR family n=2 Tax=Sphingomonas wittichii RepID=A5VCF2_SPHWW
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:KGB53931.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2077_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1317..2699)
DNA (1383bp) protein (461aa)
Putative major facilitator superfamily transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNS5_9SPHN
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAD50237.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
major facilitator superfamily transporter
SCNpilot_cont_300_bf_scaffold_2077_curated_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2696..3550)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A071
Uncharacterized protein {ECO:0000313|EMBL:AHE53288.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2077_curated_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3550..4290)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXX4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53287.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2077_curated_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4362..4967)
DNA (606bp) protein (202aa)
Putative iron-sulfur protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YN65_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Rieske family iron-sulfur cluster-binding protein
SCNpilot_cont_300_bf_scaffold_2077_curated_6
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4969..5310)
DNA (342bp) protein (114aa)
Rieske family iron-sulfur cluster-binding protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S846_9SPHN
Rieske family iron-sulfur cluster-binding protein
Rieske family iron-sulfur cluster-binding protein {ECO:0000313|EMBL:AGH51113.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_2077_curated_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5421..6365)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S9D2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53285.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2077_curated_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6603..7796)
DNA (1194bp) protein (398aa)
Amidohydrolase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4Z5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53284.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_2077_curated_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7938..10208)
DNA (2271bp) protein (757aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SKM9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE53282.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_2077_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10402..12123
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000376A405
Uncharacterized protein {ECO:0000313|EMBL:AJP74403.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2077_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12127..14460)
DNA (2334bp) protein (778aa)
sulfatase; K01130 arylsulfatase [EC:3.1.6.1]
Putative arylsulfatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKJ3_9SPHN
Putative arylsulfatase {ECO:0000313|EMBL:GAD48802.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_cont_300_bf_scaffold_2077_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14540..15796
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A241_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48803.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2077_curated_13
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16043..17071)
DNA (1029bp) protein (343aa)
Transcriptional regulator, AraC family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6N0_CAUSK
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:KFG89816.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2077_curated_14
unknown

Not on your lists

comp(17278..17376)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2077_curated_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17684..19141
DNA (1458bp) protein (486aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6Y7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59591.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2077_curated_16
unknown

Not on your lists

19206..19652
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2077_curated_17
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19658..21205)
DNA (1548bp) protein (516aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFL1_SPHWW
Histidine kinase {ECO:0000313|EMBL:KKC25764.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_2077_curated_18
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21613..22413)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003792E42
Sterol desaturase {ECO:0000313|EMBL:KHA79165.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2077_curated_19
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22437..22913
DNA (477bp) protein (159aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Ribonuclease VapC n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EKN5_9RHIZ
PilT domain-containing protein; K07062
Displaying 19 items

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