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SCNpilot_cont_300_bf_scaffold_465_curated

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_465_curated_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..5035)
DNA (5034bp) protein (1678aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI000263138B
Uncharacterized protein {ECO:0000313|EMBL:AHE55635.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
membrane protein of unknown function
SCNpilot_cont_300_bf_scaffold_465_curated_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5214..6428
DNA (1215bp) protein (405aa)
Transcriptional regulator, tetR family n=1 Tax=Caulobacter sp. AP07 RepID=J2P0L9_9CAUL
Transcriptional regulator, tetR family {ECO:0000313|EMBL:EJL20457.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_465_curated_3
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6489..7802
DNA (1314bp) protein (438aa)
Sodium:galactoside symporter family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NER7_9SPHN
Sodium:galactoside symporter family protein {ECO:0000313|EMBL:EAT09283.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_465_curated_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7878..10283
DNA (2406bp) protein (802aa)
Outer membrane receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GDG7_9CAUL
TonB-dependent receptor {ECO:0000313|EMBL:AHE51863.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_465_curated_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10355..11578
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Pseudoalteromonas haloplanktis RepID=UPI0002E083DF
Uncharacterized protein {ECO:0000313|EMBL:ENZ81964.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11876..12973)
DNA (1098bp) protein (366aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517, ECO:0000313|EMBL:AJP72416.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
branched-chain amino acid aminotransferase, group II (EC:2.6.1.42)
branched-chain amino acid aminotransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631691
SCNpilot_cont_300_bf_scaffold_465_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13041..13526
DNA (486bp) protein (162aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631692
MarR family transcriptional regulator {ECO:0000313|EMBL:AJP74483.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_465_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13712..14662
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036DEF6A
Transcriptional regulator {ECO:0000313|EMBL:EJL32251.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_465_curated_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14937..15545)
DNA (609bp) protein (203aa)
hemerythrin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EC378E
Hemerythrin {ECO:0000313|EMBL:AJP72418.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15608..16393)
DNA (786bp) protein (262aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000313|EMBL:AJP72419.1}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pyrroline-5-carboxylate reductase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002895495
pyrroline-5-carboxylate reductase
SCNpilot_cont_300_bf_scaffold_465_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16399..16899)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EF7DFC
Uncharacterized protein {ECO:0000313|EMBL:AJP72420.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17006..17317)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631696
Uncharacterized protein {ECO:0000313|EMBL:AJP72421.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17336..17893)
DNA (558bp) protein (186aa)
TspO and MBR like proteins n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB5A2
CrtK protein {ECO:0000313|EMBL:AJP72422.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
bzrP; benzodiazepine receptor; K07185 tryptophan-rich sensory protein
SCNpilot_cont_300_bf_scaffold_465_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17963..18700)
DNA (738bp) protein (246aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hemolysin n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9CCF
Hemolysin {ECO:0000313|EMBL:AJP72423.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_465_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18829..19506
DNA (678bp) protein (226aa)
esterase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031E9357
Esterase {ECO:0000313|EMBL:AJP72424.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19677..20645
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263169B
Uncharacterized protein {ECO:0000313|EMBL:AHE53772.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
esterase/lipase-like protein
SCNpilot_cont_300_bf_scaffold_465_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20853..21239
DNA (387bp) protein (129aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631A2C
Membrane protein {ECO:0000313|EMBL:AJP74484.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_465_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21277..21735
DNA (459bp) protein (153aa)
Fur family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631A2D
Fur family transcriptional regulator {ECO:0000313|EMBL:AJP72425.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_465_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21820..23745
DNA (1926bp) protein (642aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A2E
SCNpilot_cont_300_bf_scaffold_465_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23987..26344
DNA (2358bp) protein (786aa)
penicillin acylase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDCB
Penicillin acylase {ECO:0000313|EMBL:AJP74416.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
penicillin acylase
SCNpilot_cont_300_bf_scaffold_465_curated_21
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26341..27537
DNA (1197bp) protein (399aa)
Beta-lactamase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIV9_KORVE
Putative beta-lactamase (Penicillin-binding protein) {ECO:0000313|EMBL:KGB51820.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
beta-lactamase
SCNpilot_cont_300_bf_scaffold_465_curated_22
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27538..29079)
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00035FBF50
D-aminoacylase domain-containing protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_465_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29349..30380
DNA (1032bp) protein (344aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665, ECO:0000313|EMBL:AJP72428.1}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
heme A synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A31
Heme A synthase; K02259 cytochrome c oxidase assembly protein subunit 15
SCNpilot_cont_300_bf_scaffold_465_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30377..30691
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E59505
putative divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein
Putative divalent ion tolerance protein {ECO:0000313|EMBL:BAK68530.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_465_curated_25
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30691..31449
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003726D96
Uncharacterized protein {ECO:0000313|EMBL:EJK80228.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_cont_300_bf_scaffold_465_curated_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31583..32062
DNA (480bp) protein (160aa)
50S ribosomal protein L13 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030EA7DB
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
rplM; 50S ribosomal protein L13
SCNpilot_cont_300_bf_scaffold_465_curated_27
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32062..32619
DNA (558bp) protein (186aa)
30S ribosomal protein S9 n=1 Tax=Sphingomonas elodea RepID=UPI0002631A34
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_cont_300_bf_scaffold_465_curated_28
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32711..33196
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5X9_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ72560.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_465_curated_29
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33193..34800)
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000365AB0B
Uncharacterized protein {ECO:0000313|EMBL:AHE57160.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
saccharopine dehydrogenase
SCNpilot_cont_300_bf_scaffold_465_curated_30
unknown

Not on your lists

comp(34797..35195)
DNA (399bp) protein (133aa)

This feature has no annotations

Displaying items 1-30 of 39 in total

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