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SCNpilot_cont_300_bf_scaffold_32_curated

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Displaying items 1-30 of 1121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_32_curated_1
unknown

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_32_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(252..977)
DNA (726bp) protein (242aa)
carboxymethylenebutenolidase n=1 Tax=Sphingomonas elodea RepID=UPI000263137B
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AJP73942.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative dienelactone hydrolase
SCNpilot_cont_300_bf_scaffold_32_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1046..1732
DNA (687bp) protein (229aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
gpm; phosphoglycerate mutase; K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
phosphoglyceromutase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030FBC8A
SCNpilot_cont_300_bf_scaffold_32_curated_4
unknown

Not on your lists

comp(1735..1995)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_32_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2126..2662
DNA (537bp) protein (179aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp.
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Sphingomonas elodea RepID=UPI0002631322
SCNpilot_cont_300_bf_scaffold_32_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2659..3735
DNA (1077bp) protein (359aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sph
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
phosphoribosylaminoimidazole carboxylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030015E0
SCNpilot_cont_300_bf_scaffold_32_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3767..4699)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50707.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5024..5323)
DNA (300bp) protein (100aa)
signal peptide protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306F4
Signal peptide protein {ECO:0000313|EMBL:AJP73932.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5338..8205)
DNA (2868bp) protein (956aa)
peptidase M16 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030D1421
Peptidase M16 {ECO:0000313|EMBL:AJP73933.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M16 domain-containing protein
SCNpilot_cont_300_bf_scaffold_32_curated_10
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

8333..10042
DNA (1710bp) protein (570aa)
Gll4423 protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MX08_9SPHN
Peptidase M28 {ECO:0000313|EMBL:KIY12787.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
peptidase M28
SCNpilot_cont_300_bf_scaffold_32_curated_11
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10131..11945
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R6X5_OWEHD
hypothetical protein
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
SCNpilot_cont_300_bf_scaffold_32_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12047..14344)
DNA (2298bp) protein (766aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas elodea RepID=UPI0002632164
TonB-dependent receptor {ECO:0000313|EMBL:AJP73934.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_32_curated_13
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14581..17334
DNA (2754bp) protein (918aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DII7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL92674.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_14
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17439..19382
DNA (1944bp) protein (648aa)
Uncharacterized protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DF6_STIAD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_cont_300_bf_scaffold_32_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19461..22040
DNA (2580bp) protein (860aa)
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DE8367
clpB; chaperone protein ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_32_curated_16
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22168..25260)
DNA (3093bp) protein (1031aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VHP3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:EJU12287.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_32_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25530..26432)
DNA (903bp) protein (301aa)
peptidase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC0E
Peptidase {ECO:0000313|EMBL:AJP74734.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M23B
SCNpilot_cont_300_bf_scaffold_32_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26432..26632)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI00028865D9
Uncharacterized protein {ECO:0000313|EMBL:AJP73937.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26664..28040)
DNA (1377bp) protein (459aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
exodeoxyribonuclease VII large subunit n=1 Tax=Sphingomonas elodea RepID=UPI0002630201
exodeoxyribonuclease VII large subunit
SCNpilot_cont_300_bf_scaffold_32_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28054..29301
DNA (1248bp) protein (416aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:AJP73939.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
purD; phosphoribosylamine-glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
phosphoribosylamine--glycine ligase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D671CA
SCNpilot_cont_300_bf_scaffold_32_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29438..30208
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000367820A
Uncharacterized protein {ECO:0000313|EMBL:AJP73940.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30388..31695)
DNA (1308bp) protein (436aa)
DNA-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI00026312FE
DNA-binding protein {ECO:0000313|EMBL:AJP73929.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31770..32222)
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
CMP deaminase n=1 Tax=Sphingomonas elodea RepID=UPI0002631300
SCNpilot_cont_300_bf_scaffold_32_curated_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32417..32713)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631302
Uncharacterized protein {ECO:0000313|EMBL:AJP73925.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_32_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32887..33183
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F19EFA
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373, ECO:0000313|EMBL:AJP73924.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
SCNpilot_cont_300_bf_scaffold_32_curated_26
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33300..33917)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YC93_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86626.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_300_bf_scaffold_32_curated_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33980..34978)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631304
Uncharacterized protein {ECO:0000313|EMBL:AJP74733.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_32_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35167..35889)
DNA (723bp) protein (241aa)
acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
acetoacetyl-CoA reductase n=1 Tax=Sphingomonas elodea RepID=UPI0002631305
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:AJP73923.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_32_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35922..36947)
DNA (1026bp) protein (342aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1]
ferrochelatase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031AF8AE
SCNpilot_cont_300_bf_scaffold_32_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36944..39184)
DNA (2241bp) protein (747aa)
aldehyde oxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000360F2BA
Aldehyde oxidase {ECO:0000313|EMBL:AJP74732.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
isoquinoline 1-oxidoreductase
Displaying items 1-30 of 1121 in total

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