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SCNpilot_cont_300_bf_scaffold_138_curated

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Displaying items 1-30 of 404 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_138_curated_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..344
DNA (342bp) protein (114aa)
acetaldehyde dehydrogenase (EC:1.2.1.10)
Acetaldehyde dehydrogenase 1/2 {ECO:0000255|HAMAP-Rule:MF_01657}; EC=1.2.1.10 {ECO:0000255|HAMAP-Rule:MF_01657};; Acetaldehyde dehydrogenase [acetylating] 1/2 {ECO:0000255|HAMAP-Rule:MF_01657}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Acetaldehyde dehydrogenase 1/2 n=2 Tax=Sphingomonas wittichii RepID=ACDH1_SPHWW
SCNpilot_cont_300_bf_scaffold_138_curated_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

341..1375
DNA (1035bp) protein (345aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, partial n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A13
4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase
SCNpilot_cont_300_bf_scaffold_138_curated_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1372..2151
DNA (780bp) protein (260aa)
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:KGB56280.1}; EC=4.1.1.77 {ECO:0000313|EMBL:KGB56280.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
4-oxalocrotonate decarboxylase (EC:4.1.1.77); K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
4-oxalocrotonate decarboxylase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248864C
SCNpilot_cont_300_bf_scaffold_138_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2148..2579
DNA (432bp) protein (144aa)
2-aminomuconate deaminase (EC:3.5.99.5); K15067 2-aminomuconate deaminase [EC:3.5.99.5]
Endoribonuclease L-PSP n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8U6_9SPHN
Endoribonuclease L-PSP {ECO:0000313|EMBL:ENY79871.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_138_curated_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2576..3121
DNA (546bp) protein (182aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6); K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX64_9SPHN
SCNpilot_cont_300_bf_scaffold_138_curated_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3338..5587
DNA (2250bp) protein (750aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V772_SPHWW
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABQ68138.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_138_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5647..7011
DNA (1365bp) protein (455aa)
PREDICTED: uncharacterized protein YJL213W-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C144FD
Xaa-Pro dipeptidase family enzyme {ECO:0000313|EMBL:GAO53476.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_138_curated_8
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7008..8795
DNA (1788bp) protein (596aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39LG1_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KHS00483.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_138_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8830..9735
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX72_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY79882.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_138_curated_10
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9748..10746
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037167D5
Bile acid:sodium symporter {ECO:0000313|EMBL:ESQ93305.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
putative sodium-dependent transporter; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
SCNpilot_cont_300_bf_scaffold_138_curated_11
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10750..12423)
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036513EE
Uncharacterized protein {ECO:0000313|EMBL:EQB09000.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
acid phosphatase
SCNpilot_cont_300_bf_scaffold_138_curated_12
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12470..13369)
DNA (900bp) protein (300aa)
dhlA; haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5]
haloalkane dehalogenase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B448C3
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_138_curated_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13447..14211)
DNA (765bp) protein (255aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C004
AraC family transcriptional regulator {ECO:0000313|EMBL:KEZ18698.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_138_curated_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14302..15519
DNA (1218bp) protein (406aa)
Fosmidomycin resistance protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C005
Uncharacterized protein {ECO:0000313|EMBL:EKU77187.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
SCNpilot_cont_300_bf_scaffold_138_curated_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15639..17240)
DNA (1602bp) protein (534aa)
peptidase S10 n=1 Tax=Sphingomonas wittichii RepID=UPI00036AC47C
peptidase S10, serine carboxypeptidase
Peptidase S10, serine carboxypeptidase {ECO:0000313|EMBL:ABQ69468.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_138_curated_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17288..18391)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GDC5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98042.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
ABC-2 type transporter domain-containing protein; K09686 antibiotic transport system permease protein
SCNpilot_cont_300_bf_scaffold_138_curated_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18388..19554)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBL1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98041.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_138_curated_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19560..20576)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G2Z1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98040.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative HlyD family secretion protein; K01993 HlyD family secretion protein
SCNpilot_cont_300_bf_scaffold_138_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20573..21937)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HF62_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98039.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_138_curated_20
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22136..23743
DNA (1608bp) protein (536aa)
peptidase S10 n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C4F2
Peptidase S10 family protein {ECO:0000313|EMBL:GAO39816.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
peptidase S10 family protein
SCNpilot_cont_300_bf_scaffold_138_curated_21
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23788..26004)
DNA (2217bp) protein (739aa)
TonB-dependent receptor n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L5T7_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:KGB55146.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_138_curated_22
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26112..26846)
DNA (735bp) protein (245aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2HHD0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL25882.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_138_curated_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26940..28100
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003738F0D
DNA, contig: SP630 {ECO:0000313|EMBL:GAN13953.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
membrane fusion protein; K03585 membrane fusion protein
SCNpilot_cont_300_bf_scaffold_138_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28107..31253
DNA (3147bp) protein (1049aa)
multidrug transporter n=1 Tax=Sphingomonas melonis RepID=UPI0003807788
Sphingomonas taxi strain 30a NODE_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27059.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acrB; hydrophobic/amphiphilic exporter-1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_cont_300_bf_scaffold_138_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31250..32677
DNA (1428bp) protein (476aa)
transporter n=1 Tax=Sphingomonas melonis RepID=UPI00037CB3B5
Sphingomonas taxi strain 30a NODE_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27058.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative outer membrane protein
SCNpilot_cont_300_bf_scaffold_138_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32747..33013
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381A8FB
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29520.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_138_curated_27
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33031..34191)
DNA (1161bp) protein (387aa)
Kynurenine--oxoglutarate transaminase {ECO:0000313|EMBL:KFG90237.1}; EC=2.6.1.7 {ECO:0000313|EMBL:KFG90237.1};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
kynurenine--oxoglutarate transaminase (EC:2.6.1.7)
aminotransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6164C
SCNpilot_cont_300_bf_scaffold_138_curated_28
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34276..34941)
DNA (666bp) protein (222aa)
putative NAD(P)H dehydrogenase (EC:1.6.5.2)
NAD(P)H dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002883632
Putative NAD(P)H dehydrogenase {ECO:0000313|EMBL:GAM01386.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_138_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35068..36687
DNA (1620bp) protein (540aa)
Acyl-CoA dehydrogenase (EC:1.3.99.3); K09456 putative acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1R7_9SPHN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENY81427.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_138_curated_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36697..37356)
DNA (660bp) protein (220aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P9_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO57019.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
Displaying items 1-30 of 404 in total

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