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SCNpilot_expt_500_bf_scaffold_1189_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1189_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..735)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81049.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1189_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(856..2136)
DNA (1281bp) protein (427aa)
Glucose/galactose transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URJ8_9SPHN
Glucose/galactose transporter {ECO:0000313|EMBL:ENY81095.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glucose/galactose transporter; K02429 MFS transporter, FHS family, L-fucose permease
SCNpilot_expt_500_bf_scaffold_1189_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2219..3532)
DNA (1314bp) protein (438aa)
alpha-glucosidase; K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URZ0_9SPHN
Alpha-glucosidase {ECO:0000313|EMBL:ENY81094.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1189_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4205..4399)
DNA (195bp) protein (65aa)
alpha amylase; K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha amylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBG4_9SPHN
Alpha amylase {ECO:0000313|EMBL:ENY81093.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1189_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5034..5687
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A6H7_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE59994.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_500_bf_scaffold_1189_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5814..7622)
DNA (1809bp) protein (603aa)
Alpha amylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W0U5_9SPHN
Alpha amylase {ECO:0000313|EMBL:ENY81092.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
alpha amylase
SCNpilot_expt_500_bf_scaffold_1189_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7619..9124)
DNA (1506bp) protein (502aa)
tryptophan halogenase; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7]
Tryptophan halogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC99_9SPHN
Tryptophan halogenase {ECO:0000313|EMBL:ENY81091.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1189_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9199..12024)
DNA (2826bp) protein (942aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URJ0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY81090.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1189_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12332..13366
DNA (1035bp) protein (345aa)
LacI family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URY4_9SPHN
LacI family transcriptional regulator {ECO:0000313|EMBL:ENY81089.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LacI family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1189_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13469..14962
DNA (1494bp) protein (498aa)
Major facilitator superfamily transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBG0_9SPHN
Major facilitator superfamily transporter {ECO:0000313|EMBL:ENY81088.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_1189_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15231..16730)
DNA (1500bp) protein (500aa)
Putative MFS permease n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WC96_9SPHN
Putative MFS permease {ECO:0000313|EMBL:ENY81086.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1189_curated_12
unknown

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comp(16931..17080)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1189_curated_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17842..18780
DNA (939bp) protein (313aa)
Phage integrase family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPG2_9SPHN
Phage integrase family protein {ECO:0000313|EMBL:KGB53576.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
phage integrase family protein
SCNpilot_expt_500_bf_scaffold_1189_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19759..20634)
DNA (876bp) protein (292aa)
Chromate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR97_9SPHN
Chromate transporter {ECO:0000313|EMBL:ENY80854.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
chromate transporter; K07240 chromate transporter
Displaying 14 items

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