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SCNpilot_expt_500_bf_scaffold_2161_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2161_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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214..774
DNA (561bp) protein (187aa)
Alkyl hydroperoxide reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFR1_9SPHN
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:ENY82558.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
alkyl hydroperoxide reductase
SCNpilot_expt_500_bf_scaffold_2161_curated_2
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1155..2363
DNA (1209bp) protein (403aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024893DD
Integrase {ECO:0000313|EMBL:KGB59218.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
phage integrase family protein
SCNpilot_expt_500_bf_scaffold_2161_curated_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2677..3204
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJZ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11268.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_expt_500_bf_scaffold_2161_curated_4
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3600..4070
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002F5C809
Uncharacterized protein {ECO:0000313|EMBL:KGB59215.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2161_curated_5
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4278..4646
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ74_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGB59214.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2161_curated_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4643..6541
DNA (1899bp) protein (633aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP67_SPHYA
Type IV secretory pathway VirD4 components-like protein {ECO:0000313|EMBL:KGB59213.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
Type IV secretory pathway VirD4 components-like protein
SCNpilot_expt_500_bf_scaffold_2161_curated_7
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6541..9351
DNA (2811bp) protein (937aa)
TrwC protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ76_SPHAL
TrwC protein {ECO:0000313|EMBL:KGB59212.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TrwC protein
SCNpilot_expt_500_bf_scaffold_2161_curated_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9393..10313
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB59211.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2161_curated_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10521..11012
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
Nucleotidyltransferase {ECO:0000313|EMBL:KGB59210.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2161_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11393..11524
DNA (132bp) protein (44aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CP58_SPHYA
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU74089.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_expt_500_bf_scaffold_2161_curated_11
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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comp(11644..11877)
DNA (234bp) protein (78aa)
SpoVT/AbrB domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C066_NITHN
SpoVT/AbrB domain-containing protein
Tax=RBG_16_Acidobacteria_68_9_curated
SCNpilot_expt_500_bf_scaffold_2161_curated_12
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12101..13147)
DNA (1047bp) protein (349aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GWD6_SPHAL
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABF52036.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Displaying 12 items

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