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SCNpilot_expt_500_bf_scaffold_3992_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3992_curated_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1460
DNA (1458bp) protein (486aa)
Cyclopentanone 1,2-monooxygenase {ECO:0000313|EMBL:AJA09554.1}; EC=1.14.13.16 {ECO:0000313|EMBL:AJA09554.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Putative monooxygenase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5F1_ERYLH
monooxygenase
SCNpilot_expt_500_bf_scaffold_3992_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2595..3071)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CPE2_SPHYA
Putative transposase for insertion sequence element {ECO:0000313|EMBL:KHS41557.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3992_curated_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3429..4340)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DBU4_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74970.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
transposase IS204/IS1001/IS1096/IS1165 family protein
SCNpilot_expt_500_bf_scaffold_3992_curated_4
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5220..6440
DNA (1221bp) protein (407aa)
UPI0003CFFAD8 related cluster n=1 Tax=unknown RepID=UPI0003CFFAD8
symbiosis island integrase
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_500_bf_scaffold_3992_curated_5
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6474..6800)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I976_9SPHN
single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_expt_500_bf_scaffold_3992_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7204..7497)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBG0_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24813.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_3992_curated_7
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7801..8190)
DNA (390bp) protein (130aa)
UPI0003CFC57F related cluster n=1 Tax=unknown RepID=UPI0003CFC57F
Uncharacterized protein {ECO:0000313|EMBL:KEO88927.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3992_curated_8
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8187..8375)
DNA (189bp) protein (63aa)
UPI0003CFF006 related cluster n=1 Tax=unknown RepID=UPI0003CFF006
Uncharacterized protein {ECO:0000313|EMBL:KEO88928.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
SCNpilot_expt_500_bf_scaffold_3992_curated_9
unknown

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comp(8993..9127)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3992_curated_10
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9458..10633
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8P2_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ71385.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_3992_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10650..12716)
DNA (2067bp) protein (689aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LK1_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07183.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_500_bf_scaffold_3992_curated_12
Hafnia paralvei, Hafnia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12717..13625)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7NVU1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHS50375.1}; TaxID=546367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Hafnia.;" source="Hafnia paralvei.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3992_curated_13
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13615..14184)
DNA (570bp) protein (190aa)
Endonuclease n=1 Tax=Aeromonas salmonicida subsp. pectinolytica 34mel RepID=T0PQ85_AERSA
Endonuclease {ECO:0000313|EMBL:EQC06142.1}; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
endonuclease
SCNpilot_expt_500_bf_scaffold_3992_curated_14
Hafnia paralvei, Hafnia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14285..16243)
DNA (1959bp) protein (653aa)
Endonuclease n=1 Tax=Aeromonas salmonicida subsp. pectinolytica 34mel RepID=T0PQ85_AERSA
Endonuclease {ECO:0000313|EMBL:KHS50376.1}; TaxID=546367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Hafnia.;" source="Hafnia paralvei.;"
endonuclease
SCNpilot_expt_500_bf_scaffold_3992_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16240..17718)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=5 Tax=Pseudomonas aeruginosa RepID=U8BTS9_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:GAO23815.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3992_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17718..18137)
DNA (420bp) protein (140aa)
DNA mismatch endonuclease vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
T/G mismatch-specific endonuclease {ECO:0000313|EMBL:ABJ07187.1}; EC=3.1.-.- {ECO:0000313|EMBL:ABJ07187.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
T/G mismatch-specific endonuclease n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LJ7_RHOP5
SCNpilot_expt_500_bf_scaffold_3992_curated_17
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18134..19261)
DNA (1128bp) protein (376aa)
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
UPI0003CFC8F0 related cluster n=1 Tax=unknown RepID=UPI0003CFC8F0
DNA methyltransferase {ECO:0000313|EMBL:ESZ78369.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
SCNpilot_expt_500_bf_scaffold_3992_curated_18
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20063..20923)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031B46C7
Exonuclease V subunit alpha {ECO:0000313|EMBL:KEO89368.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
exonuclease V subunit alpha
Displaying 18 items

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