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SCNpilot_expt_500_bf_scaffold_2185_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2185_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..541)
DNA (540bp) protein (180aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR11_9SPHN
SCNpilot_expt_500_bf_scaffold_2185_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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601..1335
DNA (735bp) protein (245aa)
Glycine cleavage T protein (Aminomethyl transferase) n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAN7_9SPHN
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:ENY80758.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glycine cleavage T protein (aminomethyl transferase); K06980
SCNpilot_expt_500_bf_scaffold_2185_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1368..2324
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZU7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80757.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2185_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2378..2929
DNA (552bp) protein (184aa)
Aspartyl protease-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBB8_9SPHN
Aspartyl protease-like protein {ECO:0000313|EMBL:ENY80756.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
aspartyl protease-like protein
SCNpilot_expt_500_bf_scaffold_2185_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3014..3277)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQM5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80755.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09981 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2185_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3360..4154
DNA (795bp) protein (265aa)
Beta-lactamase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR07_9SPHN
Beta-lactamase-like protein {ECO:0000313|EMBL:ENY80754.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
beta-lactamase-like protein
SCNpilot_expt_500_bf_scaffold_2185_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4190..4630)
DNA (441bp) protein (147aa)
Eicosanoid and glutathione metabolism membrane-associated protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAN3_9SPHN
Eicosanoid and glutathione metabolism membrane-associated protein {ECO:0000313|EMBL:ENY80753.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
eicosanoid and glutathione metabolism membrane-associated protein; K07136
SCNpilot_expt_500_bf_scaffold_2185_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4975..5154
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZU5_9SPHN
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_expt_500_bf_scaffold_2185_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5177..6211
DNA (1035bp) protein (345aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyx
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15]
Phosphate acyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBB5_9SPHN
SCNpilot_expt_500_bf_scaffold_2185_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6208..7173
DNA (966bp) protein (322aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQM1_9SPHN
SCNpilot_expt_500_bf_scaffold_2185_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7345..7638
DNA (294bp) protein (98aa)
Integration host factor subunit alpha n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR03_9SPHN
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_expt_500_bf_scaffold_2185_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7653..8042
DNA (390bp) protein (130aa)
MerR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAN0_9SPHN
MerR family transcriptional regulator {ECO:0000313|EMBL:ENY80748.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
MerR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2185_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8079..9611)
DNA (1533bp) protein (511aa)
AMP-dependent synthetase and ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZU1_9SPHN
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ENY80747.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_500_bf_scaffold_2185_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9698..10438
DNA (741bp) protein (247aa)
Response regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBB0_9SPHN
Response regulator {ECO:0000313|EMBL:ENY80746.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Two component transcriptional regulator, winged helix family; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_500_bf_scaffold_2185_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10535..11029
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQL6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80745.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2185_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11093..11776)
DNA (684bp) protein (228aa)
putative phosphohistidine phosphatase, SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Putative phosphohistidine phosphatase, SixA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQZ9_9SPHN
Putative phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:ENY80744.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2185_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11715..12842)
DNA (1128bp) protein (376aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
Helicase c2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAM8_9SPHN
Helicase c2 {ECO:0000313|EMBL:ENY80743.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying 17 items

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