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SCNpilot_expt_500_bf_scaffold_1129_curated_5

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 3334..3942

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDY9_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 202.0
  • Bit_score: 390
  • Evalue 1.20e-105
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 202.0
  • Bit_score: 390
  • Evalue 1.60e-105
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.9
  • Coverage: 178.0
  • Bit_score: 164
  • Evalue 3.20e-38

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 609
GTGGCAACCGCGATCCCCATGATGCAGGCCGACCGCGAGACGCTCGTCGATATTGCGCGCGCGCGGCTGGTGCGTGCGATCGAGGCGGTCGGCCGCGGCGACGAGGAAGCGATGCGCACGCTCTACCGGCTGACCTCGGCGAAGCTGTTCGGCATCTGCCTCAGAATCTGCGGCGAAAGGGCGCAGGCGGAAGATGTGCTGCAGAGCGCTTATCTGAAGATCTGGGAAAATGCGGCGCGTTTCGACCGGCGGCGCGCGAGCCCGATCAGTTGGCTCGCCGCGATAGCGCGAAATGCCGCGATCGACTGGCGTCGCTCGGCTGAAGCACGCGGCCTGCTGCGCCAGCAACCGATCGACGACGCGCTGAGCCTGCGCCCCGACGAAGGCGCAGGTCCGGATGCGCTGCTTGACCAGCGCGACAGCCGCGCGACCATCGACCGCTGCCTCGCGGCGCTTGATGCGCGCGCGGCCGGCTTTCTGCGGACCGCCTTTTTCGAGGGGCTCTCCTACCGCGAACTTGCGGCGCGCGAAGCGTTGCCGCTCGGCACGATCAAAAGCATTATCCGGCGCTCGCTCGTCCGCTTGCGCGCCTGCCTCGGCGATGTCTGA
PROTEIN sequence
Length: 203
VATAIPMMQADRETLVDIARARLVRAIEAVGRGDEEAMRTLYRLTSAKLFGICLRICGERAQAEDVLQSAYLKIWENAARFDRRRASPISWLAAIARNAAIDWRRSAEARGLLRQQPIDDALSLRPDEGAGPDALLDQRDSRATIDRCLAALDARAAGFLRTAFFEGLSYRELAAREALPLGTIKSIIRRSLVRLRACLGDV*