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SCNpilot_expt_500_bf_scaffold_1423_curated_20

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 18885..19787

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPA3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 300.0
  • Bit_score: 589
  • Evalue 1.90e-165
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 300.0
  • Bit_score: 589
  • Evalue 2.70e-165
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 96.3
  • Coverage: 300.0
  • Bit_score: 572
  • Evalue 7.70e-161

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 903
ATGGCTAACAAAAGCAATGTTCCGGCAGTGGTGCCCGCGCTCGGCGGTGAGGCGAGCCTGAACCGCTATCTGGCCGAAATCCGCAAATTTCCGCTTCTGACGCCCGAGCAGGAATATATGCTCGCCAAGCGTTTTCAGGAGCATGGCGACAGCGAAGCTGCGGCGCAGCTCGTCACCTCGCACCTGCGTCTCGTCGCTAAGATCGCGATGGGCTATCGCGGCTATGGCCTGCCGGTCAGCGAACTGATCAGCGAAGGCAATATCGGGCTGATGCAGGGCGTGAAGAAATTCGACCCCGAACGCGGCTTCCGCCTCGCCACCTATGCGATGTGGTGGATCCGCGCCTCGATCCAGGAATTCATCCTGCGCTCGTGGAGCCTAGTGAAGATGGGCACTACCGCGGCCCAGAAGAAGCTGTTCTTCAACCTGCGCCGGATGAAGAATAATCTTGAAGCGTTCGAGGACGGCGATCTCAGCCCCGAAAACGTCGCCAAGATCGCAAAGGATCTGGGCGTCACCGAGGATGAGGTGGTCAGCATGAACCGCCGCATGGCGATGGGCGGCGACACGTCGCTCAACGTGCCGATGGGCGAGGATGGCGACAGCCAGTGGCAGGACCTGCTCGGCGACGAAGGCCCGCTTCAGGACGAGCGCGTGGCCGAGGCCGAGGAACGCGACGTGCGGCACGAGTTGCTCACCGAAGCGCTCGCAACGCTCAACGAGCGCGAACGCCACATCCTGACCGAACGGCGCCTGACCGACGACCCGAAAACGCTCGAGGATCTGAGCCAGGTCTATGACGTCAGCCGCGAACGCGTCCGCCAGATCGAAGTGCGTGCCTTCGAAAAACTGCAAAAGGCGATGCTCAAGCTTGCCGGTGAACGCCGCCTTATCGGCGCCTGA
PROTEIN sequence
Length: 301
MANKSNVPAVVPALGGEASLNRYLAEIRKFPLLTPEQEYMLAKRFQEHGDSEAAAQLVTSHLRLVAKIAMGYRGYGLPVSELISEGNIGLMQGVKKFDPERGFRLATYAMWWIRASIQEFILRSWSLVKMGTTAAQKKLFFNLRRMKNNLEAFEDGDLSPENVAKIAKDLGVTEDEVVSMNRRMAMGGDTSLNVPMGEDGDSQWQDLLGDEGPLQDERVAEAEERDVRHELLTEALATLNERERHILTERRLTDDPKTLEDLSQVYDVSRERVRQIEVRAFEKLQKAMLKLAGERRLIGA*