ggKbase home page

SCNpilot_cont_300_bf_scaffold_101_curated

Search features with annotation key words

Displaying items 121-150 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_101_curated_121
unknown

Not on your lists

122508..122639
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_101_curated_122
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

122689..123969
DNA (1281bp) protein (427aa)
proline dehydrogenase (EC:1.5.99.8); K00318 proline dehydrogenase [EC:1.5.99.8]
proline dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI000361871B
Proline dehydrogenase {ECO:0000313|EMBL:AKD57755.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_101_curated_123
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

124143..124967
DNA (825bp) protein (275aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
signal peptidase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037FD6D5
SCNpilot_cont_300_bf_scaffold_101_curated_124
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(125105..125989)
DNA (885bp) protein (295aa)
flagellar motor protein MotB n=1 Tax=Spirosoma panaciterrae RepID=UPI0003638F0E
Membrane protein {ECO:0000313|EMBL:AKD57756.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB
SCNpilot_cont_300_bf_scaffold_101_curated_125
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

126255..127382
DNA (1128bp) protein (376aa)
6-phosphogluconolactonase (EC:3.1.1.31); K07404 6-phosphogluconolactonase [EC:3.1.1.31]
6-phosphogluconolactonase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C638B
3-carboxymuconate cyclase {ECO:0000313|EMBL:AKD57757.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_101_curated_126
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

127463..128062
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003826B58
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41690.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_127
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(128151..129254)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035FD3C3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41685.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_128
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

129321..130151
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035E3D58
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41684.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_129
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

130252..130935
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035E57C3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92363.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_300_bf_scaffold_101_curated_130
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(131026..131517)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037211DF
Uncharacterized protein {ECO:0000313|EMBL:AKD57764.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_131
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(131577..132389)
DNA (813bp) protein (271aa)
LytTR family transcriptional regulator n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CFE36
LytR family transcriptional regulator {ECO:0000313|EMBL:AKD55266.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
Sensory transduction protein lytT
SCNpilot_cont_300_bf_scaffold_101_curated_132
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(132521..133405)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000360DABB
Sensor protein lytS
Sensor protein lytS {ECO:0000313|EMBL:CCH02747.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_101_curated_133
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(133555..134637)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000365DEF0
Sensor protein lytS {ECO:0000313|EMBL:CCH52069.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
signal transduction histidine kinase LytS
SCNpilot_cont_300_bf_scaffold_101_curated_134
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

134926..135336
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003742CDB
nucleoporin, Nup153
Nucleoporin, Nup153 {ECO:0000313|EMBL:ADB41792.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_135
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

135481..136488
DNA (1008bp) protein (336aa)
putative cytochrome c (EC:1.1.99.3)
Putative cytochrome c {ECO:0000313|EMBL:CCH02655.1}; EC=1.1.99.3 {ECO:0000313|EMBL:CCH02655.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E51DA
SCNpilot_cont_300_bf_scaffold_101_curated_136
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

136635..137675
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003828DED
Sensor protein lytS {ECO:0000313|EMBL:CCH52380.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Inner membrane protein yehU
SCNpilot_cont_300_bf_scaffold_101_curated_137
unknown

Not on your lists

comp(137665..137757)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_101_curated_138
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

137818..139350
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037FCABB
PKD domain-containing protein
PKD domain-containing protein {ECO:0000313|EMBL:CCH01199.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_101_curated_139
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

139461..140804
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000367D8C2
Sensor protein lytS
Sensor protein lytS {ECO:0000313|EMBL:CCH02654.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_101_curated_140
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

140913..142061
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003816DE6
Uncharacterized protein {ECO:0000313|EMBL:EJF10663.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_141
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

142197..143297
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000371CCF1
Sensor protein lytS
Sensor protein lytS {ECO:0000313|EMBL:CCH02737.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_101_curated_142
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

143401..144321
DNA (921bp) protein (307aa)
molecular chaperone DnaJ n=1 Tax=Spirosoma panaciterrae RepID=UPI00035F946A
chaperone DnaJ domain-containing protein; K05516 curved DNA-binding protein
Chaperone DnaJ domain protein {ECO:0000313|EMBL:ADB41673.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_143
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

144333..144635
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000367886F
Uncharacterized protein {ECO:0000313|EMBL:AKD57766.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_144
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

144728..145210
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036FC133
Uncharacterized protein {ECO:0000313|EMBL:CCH56841.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_145
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

145269..146393
DNA (1125bp) protein (375aa)
peptidase S58 DmpA; K01266 D-aminopeptidase [EC:3.4.11.19]
D-aminopeptidase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037DC10B
Peptidase S58 DmpA {ECO:0000313|EMBL:ADB41671.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_146
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(146400..146966)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F4FA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41670.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_147
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(147064..149127)
DNA (2064bp) protein (688aa)
peptide transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI0003679993
oligopeptide transporter OPT family
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:ADB41669.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_148
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(149209..149877)
DNA (669bp) protein (223aa)
transcriptional regulator n=1 Tax=Spirosoma panaciterrae RepID=UPI00037161F8
Transcriptional regulator {ECO:0000313|EMBL:AKD57770.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_101_curated_149
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

150069..150527
DNA (459bp) protein (153aa)
fatty acid hydroxylase; K15746 beta-carotene 3-hydroxylase [EC:1.14.13.129]
fatty acid hydroxylase n=1 Tax=Spirosoma panaciterrae RepID=UPI00038286E5
Fatty acid hydroxylase {ECO:0000313|EMBL:ADB41667.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_150
unknown

Not on your lists

150527..150637
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying items 121-150 of 286 in total

View Taxonomy