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SCNpilot_cont_300_bf_scaffold_101_curated

Search features with annotation key words

Displaying items 211-240 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_101_curated_211
unknown

Not on your lists

208882..209091
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_101_curated_212
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

209111..209422
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035F7A62
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB41622.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_213
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

209604..210497
DNA (894bp) protein (298aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003642019
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:AKD58797.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_101_curated_214
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

210568..212091
DNA (1524bp) protein (508aa)
auxin-regulated protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AEEEB
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:ADB41616.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_215
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(212103..213365)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000360380B
Uncharacterized protein {ECO:0000313|EMBL:AKD57816.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_216
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

213580..214809
DNA (1230bp) protein (410aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
Hydroxymethylbutenyl pyrophosphate reductase {ECO:0000313|EMBL:ADB41313.1}; EC=1.17.1.2 {ECO:0000313|EMBL:ADB41313.1};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003662F1B
SCNpilot_cont_300_bf_scaffold_101_curated_217
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(214832..216526)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000369986C
Glycoside hydrolase {ECO:0000313|EMBL:AKD57818.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_218
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

216873..217343
DNA (471bp) protein (157aa)
AsnC family transcriptional regulator n=1 Tax=Spirosoma panaciterrae RepID=UPI000380BCD6
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADB41317.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_219
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(217422..218636)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037F3EF5
Uncharacterized protein {ECO:0000313|EMBL:AKD57821.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_220
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

218740..219396
DNA (657bp) protein (219aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ADB41319.1}; EC=2.4.2.8 {ECO:0000313|EMBL:ADB41319.1};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypoxanthine phosphoribosyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI000363B46D
SCNpilot_cont_300_bf_scaffold_101_curated_221
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(219494..220717)
DNA (1224bp) protein (408aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
NADH dehydrogenase subunit D n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E646A
SCNpilot_cont_300_bf_scaffold_101_curated_222
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


220965..221150
DNA (186bp) protein (62aa)
50S ribosomal protein L33 n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QEX7_SPILD
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_223
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

221253..221408
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000362D754
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41322.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_224
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

221624..222592
DNA (969bp) protein (323aa)
cell division protein FtsY n=1 Tax=Spirosoma panaciterrae RepID=UPI00037578F3
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_cont_300_bf_scaffold_101_curated_225
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

222604..222984
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E3335
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region {ECO:0000313|EMBL:ADB38864.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_226
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists

222932..223306
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037D902F
Uncharacterized protein {ECO:0000313|EMBL:KKQ17867.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
HEPN domain protein
SCNpilot_cont_300_bf_scaffold_101_curated_227
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

223299..223772
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CEAE4
Uncharacterized protein {ECO:0000313|EMBL:AKD57825.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_228
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

223867..225174
DNA (1308bp) protein (436aa)
MiaB-like tRNA modifying protein YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=504472 species="Bacteria; Bac
ribosomal protein S12 methylthiotransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI000375341A
SCNpilot_cont_300_bf_scaffold_101_curated_229
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

225184..225486
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036A3611
Nucleotidyltransferase {ECO:0000313|EMBL:AKD57827.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DNA polymerase beta domain-containing protein; K07075
SCNpilot_cont_300_bf_scaffold_101_curated_230
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

225467..225715
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B4D74
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
SCNpilot_cont_300_bf_scaffold_101_curated_231
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

225905..227452
DNA (1548bp) protein (516aa)
Putative cysteine ligase BshC {ECO:0000256|HAMAP-Rule:MF_01867}; EC=6.-.-.- {ECO:0000256|HAMAP-Rule:MF_01867};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
bacillithiol biosynthesis cysteine-adding enzyme BshC n=1 Tax=Spirosoma panaciterrae RepID=UPI0003603E7C
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_232
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

227457..228044
DNA (588bp) protein (196aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003741DA3
SCNpilot_cont_300_bf_scaffold_101_curated_233
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

228159..229172
DNA (1014bp) protein (338aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
aspartate-semialdehyde dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003600528
SCNpilot_cont_300_bf_scaffold_101_curated_234
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

229262..230038
DNA (777bp) protein (259aa)
ABC transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00035F1DF7
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADB41333.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_235
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

230044..231708
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003638BF8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41334.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_101_curated_236
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(231774..232292)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AF91E
Uncharacterized protein {ECO:0000313|EMBL:AKD54258.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_237
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(232322..233785)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003689F9F
Uncharacterized protein {ECO:0000313|EMBL:AKD54259.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_101_curated_238
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(233810..237013)
DNA (3204bp) protein (1068aa)
membrane protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000375AE48
Membrane protein {ECO:0000313|EMBL:AKD54260.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_101_curated_239
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(237619..238383)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037FDF8A
DNA repair protein {ECO:0000313|EMBL:AKD54479.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DNA repair protein
SCNpilot_cont_300_bf_scaffold_101_curated_240
Nitritalea halalkaliphila, Nitritalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(238395..239111)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000377F952
CRISPR-associated protein Cas5 {ECO:0000313|EMBL:EIM74522.1}; TaxID=1189621 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Nitritalea.;" source="Nitritalea halalkaliphila LW7.;"
CRISPR-associated protein Cas5, Hmari subtype
Displaying items 211-240 of 286 in total

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