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SCNpilot_cont_300_bf_scaffold_38_curated

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Displaying items 1-30 of 389 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_38_curated_1
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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572..1534
DNA (963bp) protein (321aa)
von Willebrand factor A n=1 Tax=Spirosoma panaciterrae RepID=UPI000363695E
von Willebrand factor A {ECO:0000313|EMBL:AKD56201.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
von Willebrand factor A; K07114 uncharacterized protein
SCNpilot_cont_300_bf_scaffold_38_curated_2
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1650..2345
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CD787
Uncharacterized protein {ECO:0000313|EMBL:AKD56202.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_3
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2397..3572
DNA (1176bp) protein (392aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CCH54085.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CCH54085.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00035DEE76
SCNpilot_cont_300_bf_scaffold_38_curated_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3667..4599
DNA (933bp) protein (311aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003635C6C
SCNpilot_cont_300_bf_scaffold_38_curated_5
unknown

Not on your lists

4616..4705
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_38_curated_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4695..5102
DNA (408bp) protein (136aa)
anti-sigma-factor antagonist n=1 Tax=Spirosoma panaciterrae RepID=UPI00036834E8
sulfate transporter/antisigma-factor antagonist STAS
Sulfate transporter/antisigma-factor antagonist STAS {ECO:0000313|EMBL:ADB38687.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_7
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5044..6072
DNA (1029bp) protein (343aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
beta-lactamase; K00784 ribonuclease Z [EC:3.1.26.11]
ribonuclease Z n=1 Tax=Spirosoma panaciterrae RepID=UPI00036441E9
SCNpilot_cont_300_bf_scaffold_38_curated_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6228..7034
DNA (807bp) protein (269aa)
membrane protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003761A40
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38689.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7247..7747)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036CD1A8
hypothetical protein
Putative cytoplasmic protein {ECO:0000313|EMBL:ADB38690.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7716..7892)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIA7_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38691.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_11
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8039..9118
DNA (1080bp) protein (360aa)
HtrA2 peptidase {ECO:0000313|EMBL:CCH54093.1}; EC=3.4.21.108 {ECO:0000313|EMBL:CCH54093.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
HtrA2 peptidase (EC:3.4.21.108)
serine protease n=1 Tax=Spirosoma panaciterrae RepID=UPI000381C098
SCNpilot_cont_300_bf_scaffold_38_curated_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9176..10042)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035DF35E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38693.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_13
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10490..11401
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003763DD0
Uncharacterized protein {ECO:0000313|EMBL:CCH54096.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11487..12191
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003763DD0
Uncharacterized protein {ECO:0000313|EMBL:CCH54096.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_15
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12310..13842
DNA (1533bp) protein (511aa)
malate/quinone oxidoreductase (EC:1.1.5.4); K00116 malate dehydrogenase (quinone) [EC:1.1.5.4]
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
malate:quinone oxidoreductase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003610D92
SCNpilot_cont_300_bf_scaffold_38_curated_16
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13950..14705)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036453FA
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADB42326.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14864..15493
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003771E39
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42325.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15667..17361
DNA (1695bp) protein (565aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:ADB38699.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ADB38699.1};; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
gamma-glutamyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003730F7A
SCNpilot_cont_300_bf_scaffold_38_curated_19
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17474..18724
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIC0_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38704.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_38_curated_20
Fusobacterium hwasookii, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(18721..19824)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Fusobacterium nucleatum ChDC F128 RepID=J8VMB8_FUSNU
Uncharacterized protein {ECO:0000313|EMBL:EJU08591.1}; TaxID=1216362 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium hwasookii ChDC F128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_21
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19907..21463)
DNA (1557bp) protein (519aa)
major facilitator transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI0003624374
Major facilitator transporter {ECO:0000313|EMBL:AKD56216.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_300_bf_scaffold_38_curated_22
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21582..22691)
DNA (1110bp) protein (370aa)
secretion protein HlyD n=1 Tax=Spirosoma panaciterrae RepID=UPI00036417EF
Secretion protein HlyD {ECO:0000313|EMBL:AKD56217.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
secretion protein HlyD; K03543 multidrug resistance protein A
SCNpilot_cont_300_bf_scaffold_38_curated_23
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22814..24142)
DNA (1329bp) protein (443aa)
transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A9EAE
Transporter {ECO:0000313|EMBL:AKD56218.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_38_curated_24
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24144..24575)
DNA (432bp) protein (144aa)
MarR family transcriptional regulator n=1 Tax=Spirosoma panaciterrae RepID=UPI000376447D
MarR family transcriptional regulator {ECO:0000313|EMBL:AKD56219.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_38_curated_25
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24863..25546)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F540C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK02746.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_cont_300_bf_scaffold_38_curated_26
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25668..28424)
DNA (2757bp) protein (919aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DX82_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETX09093.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_27
unknown

Not on your lists

comp(28421..28762)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Butyricimonas synergistica RepID=UPI000362E01F
SCNpilot_cont_300_bf_scaffold_38_curated_28
Bacteroides sp. CAG:545, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28770..29594)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:545 RepID=R5SE77_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ43337.1}; TaxID=1262742 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:545.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_38_curated_29
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29705..31105)
DNA (1401bp) protein (467aa)
class II fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
fumarate hydratase n=1 Tax=Spirosoma panaciterrae RepID=UPI000381E4D8
SCNpilot_cont_300_bf_scaffold_38_curated_30
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31276..31716
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00037625BA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH01054.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
Displaying items 1-30 of 389 in total

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