ggKbase home page

SCNpilot_cont_300_bf_scaffold_340_curated

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_340_curated_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120..1205
DNA (1086bp) protein (362aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F7132F
Membrane protein {ECO:0000313|EMBL:AHY58610.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_340_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1227..1958)
DNA (732bp) protein (244aa)
Histidine utilization repressor n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KQ78_STEMA
Histidine utilization repressor; K05836 GntR family transcriptional regulator, histidine utilization repressor
HTH-type transcriptional repressor yvoA {ECO:0000313|EMBL:EZP45496.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
SCNpilot_cont_300_bf_scaffold_340_curated_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1978..3348)
DNA (1371bp) protein (457aa)
N-formimino-L-glutamate deiminase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AB64
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:AJC44907.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
metalo dependent hydrolase
SCNpilot_cont_300_bf_scaffold_340_curated_4
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3410..4618
DNA (1209bp) protein (403aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hutI; imidazolonepropionase (EC:3.5.2.7); K01468 imidazolonepropionase [EC:3.5.2.7]
imidazolonepropionase n=1 Tax=Xanthomonas arboricola RepID=UPI0002ECCB98
SCNpilot_cont_300_bf_scaffold_340_curated_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4697..6232
DNA (1536bp) protein (512aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
histidine ammonia-lyase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000312F40C
SCNpilot_cont_300_bf_scaffold_340_curated_6
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6402..7247
DNA (846bp) protein (282aa)
Formiminoglutamase {ECO:0000313|EMBL:CCP38333.1}; EC=3.5.3.8 {ECO:0000313|EMBL:CCP38333.1};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
hypothetical protein; K01479 formiminoglutamase [EC:3.5.3.8]
Formiminoglutamase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SU41_XANCT
SCNpilot_cont_300_bf_scaffold_340_curated_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7244..8911
DNA (1668bp) protein (556aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
urocanate hydratase n=1 Tax=Dyella japonica RepID=UPI0002E14830
SCNpilot_cont_300_bf_scaffold_340_curated_8
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9129..10655
DNA (1527bp) protein (509aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF9_9GAMM
beta-lactamase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_cont_300_bf_scaffold_340_curated_9
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10726..11091
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E734D
hypothetical protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_cont_300_bf_scaffold_340_curated_10
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11084..11653
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FCFC8
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_cont_300_bf_scaffold_340_curated_11
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11650..11970
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B8D0E
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_340_curated_12
Pseudomonas entomophila, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12113..12619
DNA (507bp) protein (169aa)
acetyltransferase; K03824 putative acetyltransferase [EC:2.3.1.-]
Putative acetyltransferase, GNAT family n=1 Tax=Pseudomonas entomophila (strain L48) RepID=Q1I8I2_PSEE4
Putative acetyltransferase, GNAT family {ECO:0000313|EMBL:CAK16046.1}; TaxID=384676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas entomophila (strain L48).;"
SCNpilot_cont_300_bf_scaffold_340_curated_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12738..13469)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000377DC45
Uncharacterized protein {ECO:0000313|EMBL:KGM55748.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_340_curated_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13582..13845)
DNA (264bp) protein (88aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000311B3F8
hypothetical protein; K06078 murein lipoprotein
Membrane protein {ECO:0000313|EMBL:AHY57460.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_300_bf_scaffold_340_curated_15
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14411..15484)
DNA (1074bp) protein (358aa)
beta-lactamase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Beta-lactamase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LAE2_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EED37789.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
SCNpilot_cont_300_bf_scaffold_340_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16024..18438)
DNA (2415bp) protein (805aa)
peptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EC8390
Peptidase {ECO:0000313|EMBL:AHY58587.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
peptidase S9 prolyl oligopeptidase active site domain-containing protein
SCNpilot_cont_300_bf_scaffold_340_curated_17
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18664..19674
DNA (1011bp) protein (337aa)
Putative signal transduction protein n=1 Tax=Xanthomonas campestris pv. campestris (strain B100) RepID=B0RVZ7_XANCB
GGDEF domain-containing protein {ECO:0000313|EMBL:GAE52017.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
putative signal protein with GGDEF domain
SCNpilot_cont_300_bf_scaffold_340_curated_18
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19746..20444)
DNA (699bp) protein (233aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=J7UM31_STEMA
Ompa5 protein {ECO:0000313|EMBL:EZP43223.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
putative outer membrane lipoprotein
SCNpilot_cont_300_bf_scaffold_340_curated_19
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20731..21174)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XI82_9XANT
Uncharacterized protein {ECO:0000313|EMBL:AKC87866.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_340_curated_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21279..22961
DNA (1683bp) protein (561aa)
Long-chain fatty acid--CoA ligase {ECO:0000313|EMBL:EQM87489.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EQM87489.1};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
fadD; putative long-chain fatty acyl CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain fatty acid--CoA ligase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L5D7_STEMA
SCNpilot_cont_300_bf_scaffold_340_curated_21
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23118..24005
DNA (888bp) protein (296aa)
Enoyl-CoA hydratase n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZCN2_9XANT
Strain LMCP11 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23833.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
rpfF; RpfF protein; K13816 DSF synthase
SCNpilot_cont_300_bf_scaffold_340_curated_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24030..26207)
DNA (2178bp) protein (726aa)
rpfC; Sensory/regulatory protein rpfC (EC:2.7.3.-)
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D653D0
ATPase {ECO:0000313|EMBL:KDE89731.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_cont_300_bf_scaffold_340_curated_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26209..27270)
DNA (1062bp) protein (354aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYT7_STEMA
response regulator receiver modulated metal dependent phosphohydrolase
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:AEM51210.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_300_bf_scaffold_340_curated_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27464..28981)
DNA (1518bp) protein (506aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
lysyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F5CEA5
SCNpilot_cont_300_bf_scaffold_340_curated_25
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29082..30008)
DNA (927bp) protein (309aa)
Peptide chain release factor 2 n=2 Tax=Xanthomonas RepID=G2LR89_9XANT
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=925776 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas perforans 91-118.;"
SCNpilot_cont_300_bf_scaffold_340_curated_26
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30376..31515
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KS74_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP47103.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_340_curated_27
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31642..32985
DNA (1344bp) protein (448aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudomonas geniculata RepID=UPI00029A9A92
Uncharacterized protein {ECO:0000313|EMBL:KFN51494.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_340_curated_28
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33081..33959)
DNA (879bp) protein (293aa)
LytTR family transcriptional regulator n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031C47E4
response regulator receiver protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_300_bf_scaffold_340_curated_29
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34111..35301
DNA (1191bp) protein (397aa)
Acetyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTV4_PSEUU
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:ADV27603.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_300_bf_scaffold_340_curated_30
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35345..37072)
DNA (1728bp) protein (576aa)
recJ; putative single-stranded-DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
SsDNA exonuclease RecJ n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KCN1_STEMA
SsDNA exonuclease RecJ {ECO:0000313|EMBL:KDE89741.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
Displaying items 1-30 of 178 in total

View Taxonomy