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scnpilot_expt_500_bf_sub50_scaffold_12_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_500_bf_sub50_scaffold_12_curated_1
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199..489
DNA (291bp) protein (97aa)
DNA polymerase beta domain-containing protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JM05_ALCFA
DNA polymerase beta domain-containing protein {ECO:0000313|EMBL:BAP89372.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
nucleotidyl-transferase; K07075
scnpilot_expt_500_bf_sub50_scaffold_12_curated_2
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

486..848
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VK8_NITEU
hypothetical protein
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_3
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

842..1399
DNA (558bp) protein (186aa)
Resolvase domain protein n=5 Tax=Proteobacteria RepID=C5T7N6_ACIDE
DNA invertase {ECO:0000313|EMBL:ERJ40193.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
resolvase domain-containing protein
scnpilot_expt_500_bf_sub50_scaffold_12_curated_4
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1431..3158
DNA (1728bp) protein (576aa)
sodium:proton antiporter n=1 Tax=Cupriavidus sp. WS RepID=UPI0003757BCD
TrkA-N:Sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_5
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3176..4063)
DNA (888bp) protein (296aa)
Usp-like protein n=3 Tax=Azotobacter vinelandii RepID=C1DGW4_AZOVD
Usp-like protein
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_6
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4090..6828)
DNA (2739bp) protein (913aa)
Cation transportingP-type ATPase n=3 Tax=Azotobacter vinelandii RepID=C1DGW3_AZOVD
Cation transportingP-type ATPase
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_7
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6999..7883
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035F18B4
uspA; UspA
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7886..8086
DNA (201bp) protein (67aa)
Phage transcriptional regulator AlpA n=6 Tax=Pseudomonas RepID=L1M360_PSEPU
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:GAO23812.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
excisionase family DNA binding domain-containing protein
scnpilot_expt_500_bf_sub50_scaffold_12_curated_9
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8083..8433
DNA (351bp) protein (117aa)
Tax=BJP_08E140C01_Dechloromonas_61_78
scnpilot_expt_500_bf_sub50_scaffold_12_curated_10
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8440..9162)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AE251
Uncharacterized protein {ECO:0000313|EMBL:AJP47699.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
scnpilot_expt_500_bf_sub50_scaffold_12_curated_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9725..10231)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003824AE0
DNA repair protein RadC; K03630 DNA repair protein RadC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10607..11545
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PP59_9ZZZZ
transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11542..12411
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PP60_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12577..13251
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037FA685
Transcriptional activator protein czcR {ECO:0000313|EMBL:CDQ12289.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
two component heavy metal response winged helix family transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
scnpilot_expt_500_bf_sub50_scaffold_12_curated_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13229..14710
DNA (1482bp) protein (494aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F7CA9
scnpilot_expt_500_bf_sub50_scaffold_12_curated_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14790..16049)
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU27_9GAMM
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEM47879.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_17
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16146..16565)
DNA (420bp) protein (140aa)
Universal stress protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HNF0_PSEUO
UspA domain-containing protein
Tax=CG_Hydro_01
scnpilot_expt_500_bf_sub50_scaffold_12_curated_18
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16562..17734)
DNA (1173bp) protein (391aa)
Glutathione-regulated potassium-proton antiporter n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HMZ9_PSEUO
sodium/hydrogen exchanger
Tax=GWA2_Gallionellales_60_142_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_19
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17744..18088)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0H0C9_9GAMM
hypothetical protein
Tax=CG_Hydro_01
scnpilot_expt_500_bf_sub50_scaffold_12_curated_20
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18100..18468)
DNA (369bp) protein (123aa)
Histidine triad (HIT) protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLX9_SIDLE
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ADE12574.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_21
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18465..18851)
DNA (387bp) protein (129aa)
Putative fluoride ion transporter CrcB n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GYQ4_9GAMM
crcB protein
Tax=CG_Hydro_01
scnpilot_expt_500_bf_sub50_scaffold_12_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19358..20767
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036F296B
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG89161.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20764..21807
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036D4873
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89162.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21804..24920
DNA (3117bp) protein (1039aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003814170
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_25
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25186..26091)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375ED32
integrase family protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_26
unknown

Not on your lists

26158..26379
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_expt_500_bf_sub50_scaffold_12_curated_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26807..28345)
DNA (1539bp) protein (513aa)
SpoVR family protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035DCBEA
SpoVR family protein
SpoVR like family protein {ECO:0000313|EMBL:AAZ97187.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_12_curated_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28347..29603)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381EC44
hypothetical protein; K09786 hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29614..31533)
DNA (1920bp) protein (640aa)
PrkA family serine protein kinase n=1 Tax=Thiobacillus thioparus RepID=UPI000365C770
putative Serine protein kinase, PrkA; K07180 serine protein kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_12_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31990..32217)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003763841
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 41 in total

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