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SCNpilot_expt_1000_bf_scaffold_2159_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2159_curated_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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481..3831
DNA (3351bp) protein (1117aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-]
id=12494856 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
Multi-sensor Signal Transduction Histidine Kinase {ECO:0000313|EMBL:AAZ97242.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2159_curated_2
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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3925..4557
DNA (633bp) protein (211aa)
LuxR family transcriptional regulator id=12494857 bin=THIO_HI species=Burkholderia sp. genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RESPONSE REGULATOR, LuxR family, similar to vsrD
Tax=GWA2_Gallionellales_54_124_curated
SCNpilot_expt_1000_bf_scaffold_2159_curated_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4806..5183
DNA (378bp) protein (126aa)
response regulator receiver protein id=12494858 bin=THIO_HI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABM36110.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_2159_curated_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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5211..6356
DNA (1146bp) protein (382aa)
methyl-accepting chemotaxis sensory transducer id=12494859 bin=THIO_HI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Chemotaxis protein {ECO:0000313|EMBL:GAO37379.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_expt_1000_bf_scaffold_2159_curated_5
Pseudomonas sp. TKP, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6366..6734
DNA (369bp) protein (123aa)
chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY id=12494860 bin=THIO_HI species=Methylomonas sp. MK1 genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Chemotaxis protein CheY {ECO:0000313|EMBL:AHC36948.1}; TaxID=1415630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. TKP.;"
chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_2159_curated_6
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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6745..7077
DNA (333bp) protein (111aa)
Sulfate transporter/antisigma-factor antagonist STAS id=12494861 bin=THIO_HI species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
anti-anti-sigma regulatory factor
Tax=GWA2_Gallionellales_60_18_curated
SCNpilot_expt_1000_bf_scaffold_2159_curated_7
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7102..7509
DNA (408bp) protein (136aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
cheA; two-component system, chemotaxis family, sensor kinase id=12494862 bin=THIO_HI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cheA; two-component system, chemotaxis family, sensor kinase
SCNpilot_expt_1000_bf_scaffold_2159_curated_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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7517..9277
DNA (1761bp) protein (587aa)
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
cheA; two-component system, chemotaxis family, sensor kinase id=12494862 bin=THIO_HI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Chemotaxis protein CheA {ECO:0000313|EMBL:GAO37382.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
SCNpilot_expt_1000_bf_scaffold_2159_curated_9
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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9331..10974
DNA (1644bp) protein (548aa)
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein id=12494863 bin=THIO_HI species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
methyl-accepting chemotaxis sensory transducer
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_1000_bf_scaffold_2159_curated_10
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11279..11521
DNA (243bp) protein (81aa)
CheW protein; K03408 purine-binding chemotaxis protein CheW id=12494864 bin=THIO_HI species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
chemotaxis protein CheW; K03408 purine-binding chemotaxis protein CheW
CheW-like protein {ECO:0000313|EMBL:AAZ45900.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_expt_1000_bf_scaffold_2159_curated_11
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11584..12393
DNA (810bp) protein (270aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
cheR; chemotaxis protein methyltransferase id=12494865 bin=THIO_HI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cheR; chemotaxis protein methyltransferase
SCNpilot_expt_1000_bf_scaffold_2159_curated_12
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12399..12932
DNA (534bp) protein (178aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
cheD; chemotaxis protein id=12494866 bin=THIO_HI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cheD; chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_2159_curated_13
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12917..13993
DNA (1077bp) protein (359aa)
chemotaxis-specific methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
cheB; two-component system, chemotaxis family, response regulator id=12494867 bin=THIO_HI species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=GWA2_Gallionellales_60_18_curated
SCNpilot_expt_1000_bf_scaffold_2159_curated_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14017..17019
DNA (3003bp) protein (1001aa)
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12494869 bin=THIO_HI species=Janthinobacterium sp. CG3 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25599.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2159_curated_15
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17016..19946
DNA (2931bp) protein (977aa)
Signal transduction histidine-protein kinase BarA {ECO:0000313|EMBL:GAO31989.1}; EC=2.7.13.3 {ECO:0000313|EMBL:GAO31989.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Hybrid sensor histidine kinase id=12494870 bin=THIO_HI species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Hybrid sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_2159_curated_16
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20002..20307
DNA (306bp) protein (102aa)
hypothetical protein id=12494871 bin=THIO_HI species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2159_curated_17
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20325..22058
DNA (1734bp) protein (578aa)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain id=12494872 bin=THIO_HI species=Chitiniphilus shinanonensis genus=Chitiniphilus taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AEV26100.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying 17 items

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