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SCNpilot_expt_1000_bf_scaffold_2033_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2033_curated_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(182..655)
DNA (474bp) protein (158aa)
MarR family transcriptional regulator id=12493780 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
MarR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1012..2433
DNA (1422bp) protein (474aa)
lysine 2,3-aminomutase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003806E37
lysine 2,3-aminomutase related protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_3
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2465..3718
DNA (1254bp) protein (418aa)
Uncharacterized protein (Fragment) n=1 Tax=Thauera sp. 63 RepID=N6XX72_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO74508.1}; Flags: Fragment;; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein; K16053 miniconductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_2033_curated_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3999..5912
DNA (1914bp) protein (638aa)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYT_THIDA rbh
SCNpilot_expt_1000_bf_scaffold_2033_curated_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6077..6541
DNA (465bp) protein (155aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12495543 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
translation initiation factor 3; K02520 translation initiation factor IF-3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6668..6865
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Thiobacillus RepID=RL35_THIDA
50S ribosomal protein L35P; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2033_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6878..7237
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL20_THIDA
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2033_curated_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7397..8416
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=12495540 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8433..10778
DNA (2346bp) protein (782aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI0003623CF9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10810..11121
DNA (312bp) protein (104aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00035FDC03
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11084..11467
DNA (384bp) protein (128aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037BCAE5
MerR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2033_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11867..12451
DNA (585bp) protein (195aa)
superoxide dismutase, Fe (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
superoxide dismutase n=1 Tax=Thiobacillus denitrificans RepID=UPI000367B4B7
SCNpilot_expt_1000_bf_scaffold_2033_curated_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12675..13262
DNA (588bp) protein (196aa)
molybdopterin oxidoreductase Fe4S4 region; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364C64C
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 13 items

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