ggKbase home page

SCNpilot_expt_1000_bf_scaffold_478_curated

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_478_curated_1
unknown

Not on your lists

comp(536..652)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_478_curated_2

Not on your lists

comp(649..984)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2G2D8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE17365.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_478_curated_3
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(981..1235)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YVV8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC23749.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
HicA-like protein
SCNpilot_expt_1000_bf_scaffold_478_curated_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1308..2399)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Thiobacillus thioparus RepID=UPI0003647F22
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2414..2995)
DNA (582bp) protein (194aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Peptidyl-tRNA hydrolase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=PTH_THIDA rbh
SCNpilot_expt_1000_bf_scaffold_478_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3038..3646)
DNA (609bp) protein (203aa)
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 id=12495671 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_478_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3703..4653)
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source
Ribose-phosphate pyrophosphokinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLR5_THIDA
SCNpilot_expt_1000_bf_scaffold_478_curated_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4815..5648)
DNA (834bp) protein (278aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003788A70
SCNpilot_expt_1000_bf_scaffold_478_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5645..6205)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036AB3C9
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6205..7971)
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B597E
TPR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96337.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_478_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8338..9150
DNA (813bp) protein (271aa)
DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Formamidopyrimidine-DNA glycosylase id=1308450 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9217..11181
DNA (1965bp) protein (655aa)
Putative uncharacterized protein id=1308449 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11319..11570)
DNA (252bp) protein (84aa)
ferredoxin protein id=12494790 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ferredoxin protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11589..12071)
DNA (483bp) protein (161aa)
phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; EC=2.7.7.3 {ECO:0000255|HAMAP-Rule:MF_00151};; Dephospho-CoA pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; Short=PPAT {ECO:0000255|HAMAP-Rule:MF_00151};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Phosphopantetheine adenylyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=COAD_THIDA
SCNpilot_expt_1000_bf_scaffold_478_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12074..12649)
DNA (576bp) protein (192aa)
hypothetical protein; K00599 [EC:2.1.1.-]
methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C37E4
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12639..13946)
DNA (1308bp) protein (436aa)
insulinase family protein; K01422 [EC:3.4.99.-]
zinc protease n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BB06E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13936..15408)
DNA (1473bp) protein (491aa)
insulinase family protein; K01422 [EC:3.4.99.-]
peptidase M16 n=1 Tax=Thiobacillus denitrificans RepID=UPI000379CF02
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15487..16560
DNA (1074bp) protein (358aa)
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor id=12494795 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_478_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16557..17219
DNA (663bp) protein (221aa)
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein id=12495684 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17216..18124
DNA (909bp) protein (303aa)
Cell division protein FtsX id=1308441 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cell division protein FtsX; K09811 cell division transport system permease protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_21
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18451..20595
DNA (2145bp) protein (715aa)
Type I site-specific deoxyribonuclease (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease id=1327874 bin=GWE1_T_denit_62_9 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Restriction endonuclease subunit R {ECO:0000313|EMBL:GAO36137.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
SCNpilot_expt_1000_bf_scaffold_478_curated_22
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20613..22421
DNA (1809bp) protein (603aa)
N-6 DNA methylase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFU7_9PROT
Type I restriction endonuclease subunit S {ECO:0000313|EMBL:GAO36135.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
N-6 DNA methylase
SCNpilot_expt_1000_bf_scaffold_478_curated_23
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

22418..23596
DNA (1179bp) protein (393aa)
hsdS1; protein HsdS1 (EC:3.1.21.3); K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MLC8_9FIRM
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_24
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23609..24523
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000361314C
5'-nucleotidase {ECO:0000313|EMBL:KHQ98445.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
5-nucleotidase
SCNpilot_expt_1000_bf_scaffold_478_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24529..26325
DNA (1797bp) protein (599aa)
Putative uncharacterized protein id=1324504 bin=GWE1_T_denit_62_9 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26503..27348
DNA (846bp) protein (282aa)
RNA polymerase sigma factor id=1308440 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sigma-70 factor; K03089 RNA polymerase sigma-32 factor
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27439..27546)
DNA (108bp) protein (36aa)
hypothetical protein id=1308439 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27543..27767)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003781154
cytochrome oxidase maturation protein cbb3-type
Cytochrome oxidase maturation protein cbb3-type {ECO:0000313|EMBL:AAZ96297.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_478_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27764..28531)
DNA (768bp) protein (256aa)
Putative uncharacterized protein id=1308437 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_478_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28528..29964)
DNA (1437bp) protein (479aa)
Iron-sulfur cluster-binding protein id=1308436 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
iron-sulfur cluster-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 85 in total

View Taxonomy