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SCNpilot_cont_300_bf_scaffold_1515_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1515_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(126..1019)
DNA (894bp) protein (298aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY63_VARPE
SCNpilot_cont_300_bf_scaffold_1515_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1065..2180)
DNA (1116bp) protein (372aa)
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI000375D7FA
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL73400.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_300_bf_scaffold_1515_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2210..3364)
DNA (1155bp) protein (385aa)
acyL-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY61_VARPE
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU36591.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_1515_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3361..3759)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY60_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36590.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_1515_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3756..5279)
DNA (1524bp) protein (508aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonic acid semialdehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KJZ7_9BURK
Methylmalonic acid semialdehyde dehydrogenase {ECO:0000313|EMBL:EJL73398.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_1515_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5432..6343
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2T5R6_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL73397.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1515_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6360..7568
DNA (1209bp) protein (403aa)
aspartate aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000367DB19
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADU36585.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_1515_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7573..8649)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY54_VARPE
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32082.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1515_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8666..10057)
DNA (1392bp) protein (464aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CKJ5_9BURK
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJL73391.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_300_bf_scaffold_1515_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..10768)
DNA (639bp) protein (213aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:ADU36583.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ADU36583.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037170DA
SCNpilot_cont_300_bf_scaffold_1515_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10770..11582)
DNA (813bp) protein (271aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:ADU36582.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ADU36582.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
3-oxoacid CoA-transferase, A subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY52_VARPE
SCNpilot_cont_300_bf_scaffold_1515_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11677..12243
DNA (567bp) protein (189aa)
PAS domain S-box n=1 Tax=Variovorax sp. CF313 RepID=J2KJY7_9BURK
PAS domain S-box {ECO:0000313|EMBL:EJL73388.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LuxR family transcriptional regulator
Displaying 12 items

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